Accession: P09126
UROPORPHYRINOGEN-III SYNTHASE (EC 4.2.1.75) (UROS)
(UROPORPHYRINOGEN- III COSYNTHETASE) (HYDROXYMETHYLBILANE
HYDROLYASE (CYCLIZING)).
Length = 246
Score = 970 (451.1 bits)
Expect = 3.7e-132
P = 3.7e-132
Identities = 185/186 (99%)
Positives = 185/186 (99%)
Query: 1 QHAVAFAQSQLHQQDRKWPRLPDYFAIGRTTALALHTVSGQKILYPQDREISEVLLQLPE 60
QHAVAFAQSQLHQQDRKWPRLPDYFAIGRTTALALHTVSGQKILYPQDREISEVLLQLPE
Subject: 61 QHAVAFAQSQLHQQDRKWPRLPDYFAIGRTTALALHTVSGQKILYPQDREISEVLLQLPE 120
Query: 61 LQNIAGKRALILRGNGGRELIGDTLAARGAEVTFCECYQRCAIHYDGAEEAMRWQAREVT 120
LQNIAGKRALILRGNGGRELIGDTL ARGAEVTFCECYQRCAIHYDGAEEAMRWQAREVT
Subject: 121 LQNIAGKRALILRGNGGRELIGDTLTARGAEVTFCECYQRCAIHYDGAEEAMRWQAREVT 180
Query: 121 MVVVTSGEMLQQLWSLIPQWYREHWLLHCRLLVVSERLAKLARELGWQDIKVADNADNDA 180
MVVVTSGEMLQQLWSLIPQWYREHWLLHCRLLVVSERLAKLARELGWQDIKVADNADNDA
Subject: 181 MVVVTSGEMLQQLWSLIPQWYREHWLLHCRLLVVSERLAKLARELGWQDIKVADNADNDA 240
Query: 181 LLRALQ 186
LLRALQ
Subject: 241 LLRALQ 246
Accession: P48246
UROPORPHYRINOGEN-III SYNTHASE (EC 4.2.1.75) (UROS)
(UROPORPHYRINOGEN- III COSYNTHETASE) (HYDROXYMETHYLBILANE
HYDROLYASE (CYCLIZING)).
Length = 251
Score = 107 (49.8 bits)
Expect = 1.3e-18
Sum P(4) = 1.3e-18
Identities = 23/63 (36%)
Positives = 36/63 (57%)
Query: 68 RALILRGNGGRELIGDTLAARGAEVTFCECYQRCAIHYDGAEEAMRWQAREVTMVVVTSG 127
+ LI+RG GGRE + + L +G +V + Y+R A Y E R +A + +VV+SG
Subject: 132 KVLIMRGEGGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRAERLNGLVVSSG 191
Query: 128 EML 130
+ L
Subject: 192 QGL 194
Score = 61 (28.4 bits)
Expect = 1.3e-18
Sum P(4) = 1.3e-18
Identities = 17/35 (48%)
Positives = 21/35 (60%)
Query: 151 LLVVSERLAKLARELGWQDIKVADNADNDALLRAL 185
L V S R+A++ARELG Q + A ALL AL
Subject: 213 LFVPSPRVAEMARELGAQRVIDCRGASAPALLAAL 247
Score = 50 (23.3 bits)
Expect = 1.3e-18
Sum P(4) = 1.3e-18
Identities = 10/24 (41%)
Positives = 14/24 (58%)
Query: 40 GQKILYPQDREISEVLLQLPELQN 63
G + YP+ + SE LL LP Q+
Subject: 101 GLDVTYPEQGDDSEALLALPAFQD 124
Score = 36 (16.7 bits)
Expect = 1.3e-18
Sum P(4) = 1.3e-18
Identities = 7/16 (43%)
Positives = 10/16 (62%)
Query: 7 AQSQLHQQDRKWPRLP 22
A+ L + DR WP+ P
Subject: 67 ARLGLERLDRYWPQPP 82
Accession: P36751
MINOR CAPSID PROTEIN L2.
Length = 524
Score = 69 (32.1 bits)
Expect = 0.15
P = 0.14
Identities = 13/45 (28%)
Positives = 22/45 (48%)
Query: 25 FAIGRTTALALHTVSGQKILYPQDREISEVLLQLPELQNIAGKRA 69
F R T +H G + YP+ R+ +E++L P+ + K A
Subject: 470 FETPRDTGFYIHDTQGYTVAYPESRDTTEIILPHPDTPTVVIKFA 514
Accession: P18097
VIRION INFECTIVITY FACTOR (SOR PROTEIN) (Q PROTEIN).
Length = 215
Score = 55 (25.6 bits)
Expect = 3.1
Sum P(2) = 0.96
Identities = 12/42 (28%)
Positives = 21/42 (50%)
Query: 104 HYDGAEEAMRWQAREVTMVVVTSGEMLQQLWSLIPQWYREHW 145
+Y A +A + + +VVV + Q+ + QW R+HW
Subject: 136 NYPQAHKAQVPSLQYLALVVVQQNDRPQRKGTARKQWRRDHW 177
Score = 34 (15.8 bits)
Expect = 3.1
Sum P(2) = 0.96
Identities = 6/17 (35%)
Positives = 10/17 (58%)
Query: 13 QQDRKWPRLPDYFAIGR 29
++DR W +P + GR
Subject: 2 EEDRNWIVVPTWRVPGR 18
Accession: P11540
BARSTAR (RIBONUCLEASE INHIBITOR).
Length = 89
Score = 43 (20.0 bits)
Expect = 3.6
Sum P(2) = 0.97
Identities = 11/38 (28%)
Positives = 16/38 (42%)
Query: 127 GEMLQQLWSLIPQWYREHWLLHCRLLVVSERLAKLARE 164
GE L LW + W +L R S++L + E
Subject: 31 GENLDALWDCLTGWVEYPLVLEWRQFEQSKQLTENGAE 68
Score = 39 (18.1 bits)
Expect = 3.6
Sum P(2) = 0.97
Identities = 8/17 (47%)
Positives = 11/17 (64%)
Query: 9 SQLHQQDRKWPRLPDYF 25
S LHQ +K LP+Y+
Subject: 14 SDLHQTLKKELALPEYY 30
Accession: P35007
ADENOSYLHOMOCYSTEINASE (EC 3.3.1.1)
(S-ADENOSYL-L-HOMOCYSTEINE HYDROLASE) (ADOHCYASE).
Length = 485
Score = 50 (23.3 bits)
Expect = 4.9
Sum P(2) = 0.99
Identities = 9/15 (60%)
Positives = 11/15 (73%)
Query: 83 DTLAARGAEVTFCEC 97
+TL A GAEV +C C
Subject: 72 ETLTALGAEVRWCSC 86
Score = 41 (19.1 bits)
Expect = 4.9
Sum P(2) = 0.99
Identities = 10/26 (38%)
Positives = 12/26 (46%)
Query: 109 EEAMRWQAREVTMVVVTSGEMLQQLW 134
E A AR+ V GE LQ+ W
Subject: 93 EHAAAAIARDSAAVFAWKGETLQEYW 118
Accession: P50246
ADENOSYLHOMOCYSTEINASE (EC 3.3.1.1)
(S-ADENOSYL-L-HOMOCYSTEINE HYDROLASE) (ADOHCYASE).
Length = 485
Score = 50 (23.3 bits)
Expect = 6.6
Sum P(2) = 1.0
Identities = 9/15 (60%)
Positives = 11/15 (73%)
Query: 83 DTLAARGAEVTFCEC 97
+TL A GAEV +C C
Subject: 72 ETLTALGAEVRWCSC 86
Score = 40 (18.6 bits)
Expect = 6.6
Sum P(2) = 1.0
Identities = 8/19 (42%)
Positives = 10/19 (52%)
Query: 116 AREVTMVVVTSGEMLQQLW 134
AR+ V GE LQ+ W
Subject: 100 ARDSAAVFAWKGETLQEYW 118
Accession: P50248
ADENOSYLHOMOCYSTEINASE (EC 3.3.1.1)
(S-ADENOSYL-L-HOMOCYSTEINE HYDROLASE) (ADOHCYASE) (CYTOKININ
BINDING PROTEIN CBP57).
Length = 485
Score = 50 (23.3 bits)
Expect = 6.6
Sum P(2) = 1.0
Identities = 9/15 (60%)
Positives = 11/15 (73%)
Query: 83 DTLAARGAEVTFCEC 97
+TL A GAEV +C C
Subject: 72 ETLTALGAEVRWCSC 86
Score = 40 (18.6 bits)
Expect = 6.6
Sum P(2) = 1.0
Identities = 8/19 (42%)
Positives = 10/19 (52%)
Query: 116 AREVTMVVVTSGEMLQQLW 134
AR+ V GE LQ+ W
Subject: 100 ARDSAAVFAWKGETLQEYW 118
Accession: P50249
ADENOSYLHOMOCYSTEINASE (EC 3.3.1.1)
(S-ADENOSYL-L-HOMOCYSTEINE HYDROLASE) (ADOHCYASE).
Length = 485
Score = 50 (23.3 bits)
Expect = 6.6
Sum P(2) = 1.0
Identities = 9/15 (60%)
Positives = 11/15 (73%)
Query: 83 DTLAARGAEVTFCEC 97
+TL A GAEV +C C
Subject: 72 ETLTALGAEVRWCSC 86
Score = 40 (18.6 bits)
Expect = 6.6
Sum P(2) = 1.0
Identities = 8/19 (42%)
Positives = 10/19 (52%)
Query: 116 AREVTMVVVTSGEMLQQLW 134
AR+ V GE LQ+ W
Subject: 100 ARDSAAVFAWKGETLQEYW 118
Accession: P36750
MINOR CAPSID PROTEIN L2.
Length = 533
Score = 57 (26.5 bits)
Expect = 7.8
P = 1.0
Identities = 10/32 (31%)
Positives = 17/32 (53%)
Query: 25 FAIGRTTALALHTVSGQKILYPQDREISEVLL 56
F R T + V G + YP+ R+ +E++L
Subject: 467 FESPRNTGFYIQDVHGYNVAYPESRDTTEIIL 498
Accession: P42452
UROPORPHYRINOGEN-III SYNTHASE (EC 4.2.1.75) (UROS)
(UROPORPHYRINOGEN- III COSYNTHETASE) (HYDROXYMETHYLBILANE
HYDROLYASE (CYCLIZING)).
Length = 264
Score = 45 (20.9 bits)
Expect = 8.0
Sum P(2) = 1.0
Identities = 14/56 (25%)
Positives = 23/56 (41%)
Query: 2 HAVAFAQSQLHQQDRKWPRLPDYFAIGRTTALALHTVSGQKILYPQDREISEVLLQ 57
+AV Q +L Q + W +P A+ + G K Y I+E L++
Subject: 70 NAVEAVQQRLAAQQKSWSDVPCAIAVVGQKTAQVLAAQGGKADYIPPEFIAESLVE 125
Score = 42 (19.5 bits)
Expect = 8.0
Sum P(2) = 1.0
Identities = 10/24 (41%)
Positives = 13/24 (54%)
Query: 76 GGRELIGDTLAARGAEVTFCECYQ 99
GGRE I L ++GA V Y+
Subject: 144 GGREQITQALQSQGAIVVEVPAYE 167
Accession: Q01781
ADENOSYLHOMOCYSTEINASE (EC 3.3.1.1)
(S-ADENOSYL-L-HOMOCYSTEINE HYDROLASE) (ADOHCYASE).
Length = 485
Score = 50 (23.3 bits)
Expect = 9.0
Sum P(2) = 1.0
Identities = 9/15 (60%)
Positives = 11/15 (73%)
Query: 83 DTLAARGAEVTFCEC 97
+TL A GAEV +C C
Subject: 72 ETLTALGAEVRWCSC 86
Score = 39 (18.1 bits)
Expect = 9.0
Sum P(2) = 1.0
Identities = 8/19 (42%)
Positives = 10/19 (52%)
Query: 116 AREVTMVVVTSGEMLQQLW 134
AR+ V GE LQ+ W
Subject: 100 ARDSCAVFAWKGETLQEYW 118
Parameters:
B=50
H=1
V=500
-ctxfactor=1.00
E=10
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.136 0.414 same same same
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 186 186 10. 57 3 11 22 0.20 32
Statistics:
Query Expected Observed HSPs HSPs
Frame MatID High Score High Score Reportable Reported
+0 0 61 (28.4 bits) 970 (451.1 bits) 23 23
Query Neighborhd Word Excluded Failed Successful Overlaps
Frame MatID Words Hits Hits Extensions Extensions Excluded
+0 0 5521 7382828 1620664 5747066 15098 5
Database: sp.prot
Release date: unknown
Posted date: 11:35 PM CDT Aug 21, 1997
# of letters in database: 21,210,388
# of sequences in database: 59,021
# of database sequences satisfying E: 12
No. of states in DFA: 561 (55 KB)
Total size of DFA: 114 KB (128 KB)
Time to generate neighborhood: 0.02u 0.01s 0.03t Real: 00:00:01
Time to search database: 12.81u 0.46s 13.27t Real: 00:00:16
Total cpu time: 12.85u 0.60s 13.45t Real: 00:00:17