Version 2.0

BLASTP Results

Compares an amino acid query sequence against a protein sequence.

Algorithm Citation:
Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers, and David J. Lipman (1990). Basic local alignment search tool. J. Mol. Biol. 215:403-10.
Program Citation:
National Center for Biotechnology Information,Bldg 38A, NIH,8600 Rockville Pike,Bethesda, MD 20894

Protoporphyrinogen Oxidase (Barley)
Query=  Q42840MASSLLTTPSQTLAPNPAAARARRSSPAAAQVSFSSPLLPGRRA©ÄZ$r@
        (331 letters)
Database:  sp.prot
           59,021 sequences; 21,210,388 total letters.

Check Sequences and then Press 'Import to Workbench' to Import them to the Workbench


Observed Numbers of Database Sequences Satisfying Various EXPECTation Thresholds (E parameter values) Histogram units: = 24 Sequences : less than 24 sequences EXPECTation Threshold (E parameter) | V Observed Counts--> 10000 4970 1433 |=========================================================== 6310 3537 1408 |========================================================== 3980 2129 621 |========================= 2510 1508 540 |====================== 1580 968 289 |============ 1000 679 232 |========= 631 447 183 |======= 398 264 92 |=== 251 172 70 |== 158 102 40 |= 100 62 19 |: 63.1 43 15 |: 39.8 28 12 |: 25.1 16 4 |: 15.8 12 1 |: >>>>>>>>>>>>>>>>>>>>> Expect = 10.0, Observed = 11 <<<<<<<<<<<<<<<<< 10.0 11 2 |: 6.31 9 1 |: 3.98 8 0 | 2.51 8 0 | 1.58 8 1 |: Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N

Accession: P35055

COPROPORPHYRINOGEN III OXIDASE PRECURSOR (EC 1.3.3.3) (COPROPORPHYRINOGENASE) (COPROGEN OXIDASE).


Length = 385

Score = 1179 (547.5 bits)
Expect = 1.3e-199
Sum P(3) = 1.3e-199
Identities = 205/234 (87%)
Positives = 218/234 (93%)

Query:    98 AKNGAADGHKAGPVPFFSAGISSVLHPKNPFAPTLHFNYRYFETDAPKDVPGAPRSWWFG 157
             A  G     K GPVPFF+AGISSVLHPKNPFAPTLHFNYRYFETDAPKD PGAPR WWFG
Subject: 152 AAKGVPTDQKPGPVPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDAPGAPRQWWFG 211
Query:   158 GGTDLTPSYLIEEDVKHFHSVQKQTCDKFDPSFYPRFKKWCDDYFYIKHRNERRGLGGIF 217
             GGTDLTP+Y+ EEDVKHFHS+QKQ CDKF+P+FYPRFKKWCDDYFYIKHR ERRGLGGIF
Subject: 212 GGTDLTPAYIFEEDVKHFHSIQKQACDKFEPTFYPRFKKWCDDYFYIKHRGERRGLGGIF 271
Query:   218 FDDLNDYDQDMLLNFATECAGSVIPAYIPIIERRKDTPFNEEQKAWQQVRRGRYVEFNLV 277
             FDDLNDYDQ+MLL+FATECA SVIPAY+PIIE+RKD PFN+ QKAWQQ+RRGRYVEFNLV
Subject: 272 FDDLNDYDQEMLLSFATECANSVIPAYLPIIEKRKDLPFNDHQKAWQQLRRGRYVEFNLV 331
Query:   278 YDRGTTFGLKTGGRIESILVSLPLTARWEYDHKPEEGSEEWKLLDACINPKEWL 331
             YDRGTTFGLKTGGRIESILVSLPLTARWEYDHKPEEGSEEWKLLDACINPKEW+
Subject: 332 YDRGTTFGLKTGGRIESILVSLPLTARWEYDHKPEEGSEEWKLLDACINPKEWI 385

Score = 185 (85.9 bits)
Expect = 1.3e-199
Sum P(3) = 1.3e-199
Identities = 40/57 (70%)
Positives = 42/57 (73%)

Query:    40 EADGSGKRFVEDVWSRPGGVCVHSRVLQDGNVFEKAGVNVSAVIGVCPRSAYRAAKG 96
             EA   G +F EDVWSRPGG    SRVLQDG V+EKAGVNVS V GV P  AYRAAKG
Subject:  99 EAADGGAQFKEDVWSRPGGGGGISRVLQDGAVWEKAGVNVSVVYGVMPPDAYRAAKG 155

Score = 106 (49.2 bits)
Expect = 1.3e-199
Sum P(3) = 1.3e-199
Identities = 23/44 (52%)
Positives = 26/44 (59%)

Query:     3 PTTFLREDGSGAGSGSVRERFEGMIRRVQGEICAALEEADGSGK 46
             P TFLR       S SVR RFE MIR  Q  +C+ALE ADG  +
Subject:  63 PETFLRGVDEAQSSTSVRARFEKMIREAQDTVCSALEAADGGAQ 106

Accession: P11353

COPROPORPHYRINOGEN III OXIDASE (EC 1.3.3.3) (COPROPORPHYRINOGENASE) (COPROGEN OXIDASE).


Length = 328

Score = 508 (235.9 bits)
Expect = 1.1e-119
Sum P(5) = 1.1e-119
Identities = 83/142 (58%)
Positives = 107/142 (75%)

Query:   149 GAPRSWWFGGGTDLTPSYLIEEDVKHFHSVQKQTCDKFDPSFYPRFKKWCDDYFYIKHRN 208
             G P++WWFGGG DLTPSYL EED + FH + K   DK D + YPRFKKWCD+YFYI HR 
Subject: 144 GTPQTWWFGGGADLTPSYLYEEDGQLFHQLHKDALDKHDTALYPRFKKWCDEYFYITHRK 203
Query:   209 ERRGLGGIFFDDLNDYDQDMLLNFATECAGSVIPAYIPIIERRKDTPFNEEQKAWQQVRR 268
             E RG+GGIFFDD ++ D   +L    +C  + +P+Y+ I++RRKD P+ +E++ WQ +RR
Subject: 204 ETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLPSYLTIVKRRKDMPYTKEEQQWQAIRR 263
Query:   269 GRYVEFNLVYDRGTTFGLKTGG 290
             GRYVEFNL+YDRGT FGL+T G
Subject: 264 GRYVEFNLIYDRGTQFGLRTPG 285

Score = 124 (57.6 bits)
Expect = 1.1e-119
Sum P(5) = 1.1e-119
Identities = 23/43 (53%)
Positives = 29/43 (67%)

Query:   289 GGRIESILVSLPLTARWEYDHKPEEGSEEWKLLDACINPKEWL 331
             G R+ESIL+SLP  A W Y+H P  GS E KLL+    P+EW+
Subject: 285 GSRVESILMSLPEHASWLYNHHPAPGSREAKLLEVTTKPREWV 327

Score = 122 (56.7 bits)
Expect = 1.1e-119
Sum P(5) = 1.1e-119
Identities = 21/31 (67%)
Positives = 24/31 (77%)

Query:   111 VPFFSAGISSVLHPKNPFAPTLHFNYRYFET 141
             V FF+ G+S V+HP NP APT H NYRYFET
Subject: 109 VKFFACGLSMVIHPVNPHAPTTHLNYRYFET 139

Score = 87 (40.4 bits)
Expect = 1.1e-119
Sum P(5) = 1.1e-119
Identities = 20/38 (52%)
Positives = 22/38 (57%)

Query:    63 SRVLQDGNVFEKAGVNVSAVIGVCPRSAYRAAKGAAKN 100
             S V+QDG  FEK GVNVS V G    +A  A K   KN
Subject:  55 SMVIQDGTTFEKGGVNVSVVYGQLSPAAVSAMKADHKN 92

Score = 56 (26.0 bits)
Expect = 1.1e-119
Sum P(5) = 1.1e-119
Identities = 11/24 (45%)
Positives = 15/24 (62%)

Query:    19 VRERFEGMIRRVQGEICAALEEAD 42
             +R++ E +IRR Q EI   LE  D
Subject:  12 IRQQMEALIRRKQAEITQGLESID 35

Accession: P36551

COPROPORPHYRINOGEN III OXIDASE PRECURSOR (EC 1.3.3.3) (COPROPORPHYRINOGENASE) (COPROGEN OXIDASE).


Length = 354

Score = 497 (230.8 bits)
Expect = 3.6e-117
Sum P(4) = 3.6e-117
Identities = 81/139 (58%)
Positives = 104/139 (74%)

Query:   152 RSWWFGGGTDLTPSYLIEEDVKHFHSVQKQTCDKFDPSFYPRFKKWCDDYFYIKHRNERR 211
             + WWFGGG DLTP+YL +ED  HFH   K+ CD+  P  YP+FKKWCDDYF+I HR ERR
Subject: 173 KQWWFGGGCDLTPTYLNQEDAVHFHRTLKEACDQHGPDLYPKFKKWCDDYFFIAHRGERR 232
Query:   212 GLGGIFFDDLNDYDQDMLLNFATECAGSVIPAYIPIIERRKDTPFNEEQKAWQQVRRGRY 271
             G+GGIFFDDL+   ++ +  F   CA +V+P+YIP++++  D  F  ++K WQQ+RRGRY
Subject: 233 GIGGIFFDDLDSPSKEEVFRFVQSCARAVVPSYIPLVKKHCDDSFTPQEKLWQQLRRGRY 292
Query:   272 VEFNLVYDRGTTFGLKTGG 290
             VEFNL+YDRGT FGL T G
Subject: 293 VEFNLLYDRGTKFGLFTPG 311

Score = 148 (68.7 bits)
Expect = 3.6e-117
Sum P(4) = 3.6e-117
Identities = 28/50 (56%)
Positives = 33/50 (66%)

Query:    93 AAKGAAKNGAADGHKAGPVPFFSAGISSVLHPKNPFAPTLHFNYRYFETD 142
             AAK     G     K G +PF + G+SSV HPKNP APT+HFNYRYFE +
Subject: 118 AAKQMRSRGKVLKTKDGKLPFCAMGVSSVTHPKNPHAPTIHFNYRYFEVE 167

Score = 142 (65.9 bits)
Expect = 3.6e-117
Sum P(4) = 3.6e-117
Identities = 25/43 (58%)
Positives = 34/43 (79%)

Query:   289 GGRIESILVSLPLTARWEYDHKPEEGSEEWKLLDACINPKEWL 331
             G RIESIL+SLPLTARWEY H P E S+E ++L+   +P++W+
Subject: 311 GSRIESILMSLPLTARWEYMHSPSENSKEAEILEVLRHPRDWV 353

Score = 92 (42.7 bits)
Expect = 3.6e-117
Sum P(4) = 3.6e-117
Identities = 24/55 (43%)
Positives = 28/55 (50%)

Query:    45 GKRFVEDVWSRPGGVCVHSRVLQDGNVFEKAGVNVSAVIGVCPRSAYRAAKGAAK 99
             G  F  D W R  G    S VLQDG VFEKAGV++S V G     A +  +   K
Subject:  73 GANFSVDRWERKEGGGGISCVLQDGCVFEKAGVSISVVHGNLSEEAAKQMRSRGK 127

Score = 59 (27.4 bits)
Expect = 1.3e-112
Sum P(4) = 1.3e-112
Identities = 12/42 (28%)
Positives = 21/42 (50%)

Query:    17 GSVRERFEGMIRRVQGEICAALEEADGSGKRFVEDVWSRPGG 58
             G ++ + E +I   Q ++C AL + DG     V+    + GG
Subject:  46 GDMKTKMELLILETQAQVCQALAQVDGGANFSVDRWERKEGG 87

Accession: P36552

COPROPORPHYRINOGEN III OXIDASE PRECURSOR (EC 1.3.3.3) (COPROPORPHYRINOGENASE) (COPROGEN OXIDASE).


Length = 354

Score = 483 (224.3 bits)
Expect = 6.0e-115
Sum P(4) = 6.0e-115
Identities = 80/137 (58%)
Positives = 99/137 (72%)

Query:   154 WWFGGGTDLTPSYLIEEDVKHFHSVQKQTCDKFDPSFYPRFKKWCDDYFYIKHRNERRGL 213
             WWFGGG DLTP YL +ED  HFH   K+ CD+  P  YP+FKKWCDDYF+I HR ERRG+
Subject: 175 WWFGGGCDLTPRYLNQEDAVHFHRTLKEACDQHGPDIYPKFKKWCDDYFFIVHRGERRGI 234
Query:   214 GGIFFDDLNDYDQDMLLNFATECAGSVIPAYIPIIERRKDTPFNEEQKAWQQVRRGRYVE 273
             GGIFFDDL+   ++    F   CA +V+P+Y+PI+++  D  +    K WQQ+RRGRYVE
Subject: 235 GGIFFDDLDSPSKEEAFRFVKTCAEAVVPSYVPIVKKHCDDSYTPRDKLWQQLRRGRYVE 294
Query:   274 FNLVYDRGTTFGLKTGG 290
             FNL+YDRGT FGL T G
Subject: 295 FNLLYDRGTKFGLFTPG 311

Score = 144 (66.9 bits)
Expect = 6.0e-115
Sum P(4) = 6.0e-115
Identities = 26/43 (60%)
Positives = 34/43 (79%)

Query:   289 GGRIESILVSLPLTARWEYDHKPEEGSEEWKLLDACINPKEWL 331
             G RIESIL+SLPLTARWEY H P E S+E ++L+   +PK+W+
Subject: 311 GSRIESILMSLPLTARWEYMHSPPENSKEAEILEVLRHPKDWV 353

Score = 143 (66.4 bits)
Expect = 6.0e-115
Sum P(4) = 6.0e-115
Identities = 23/36 (63%)
Positives = 30/36 (83%)

Query:   107 KAGPVPFFSAGISSVLHPKNPFAPTLHFNYRYFETD 142
             K   +PF + G+SSV+HPKNP+APT+HFNYRYFE +
Subject: 132 KDSKLPFTAMGVSSVIHPKNPYAPTMHFNYRYFEVE 167

Score = 93 (43.2 bits)
Expect = 6.0e-115
Sum P(4) = 6.0e-115
Identities = 23/52 (44%)
Positives = 27/52 (51%)

Query:    48 FVEDVWSRPGGVCVHSRVLQDGNVFEKAGVNVSAVIGVCPRSAYRAAKGAAK 99
             F  D W R  G    + VLQDG VFEKAGV++S V G     A    +G  K
Subject:  76 FTVDRWERKEGGGGITCVLQDGRVFEKAGVSISVVHGNLSEEAANQMRGRGK 127

Score = 54 (25.1 bits)
Expect = 1.5e-109
Sum P(4) = 1.5e-109
Identities = 12/40 (30%)
Positives = 20/40 (50%)

Query:    19 VRERFEGMIRRVQGEICAALEEADGSGKRFVEDVWSRPGG 58
             ++ + E MI   Q ++C AL + DG     V+    + GG
Subject:  48 MKTKMELMIMETQAQVCRALAQVDGVADFTVDRWERKEGG 87

Accession: P33771

COPROPORPHYRINOGEN III OXIDASE, AEROBIC (EC 1.3.3.3) (COPROPORPHYRINOGENASE) (COPROGEN OXIDASE).


Length = 299

Score = 549 (254.9 bits)
Expect = 2.1e-103
Sum P(4) = 2.1e-103
Identities = 98/170 (57%)
Positives = 118/170 (69%)

Query:   148 PGAPRSWWFGGGTDLTPSYLIEEDVKHFHSVQKQTCDKFDPSFYPRFKKWCDDYFYIKHR 207
             PGA   WWFGGG DLTP Y  EED  H+H   +  C  F    YPR+KKWCDDYF++KHR
Subject: 117 PGADPVWWFGGGFDLTPYYGFEEDAVHWHRTARDLCQPFGDDVYPRYKKWCDDYFFLKHR 176
Query:   208 NERRGLGGIFFDDLNDYDQDMLLNFATECAGSVIPAYIPIIERRKDTPFNEEQKAWQQVR 267
             NE+RG+GG+FFDDLN  D D   +F          AY+PI+ERRK   + E ++ +Q  R
Subject: 177 NEQRGVGGLFFDDLNTPDFDHCFDFMQAVGNGYTRAYLPIVERRKAMVWGERERNFQLYR 236
Query:   268 RGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHKPEEGSEE 317
             RGRYVEFNLV+DRGT FGL+TGGR ESIL+S+P   RWEYD +PE GS E
Subject: 237 RGRYVEFNLVWDRGTLFGLQTGGRTESILMSMPPLVRWEYDWQPEAGSPE 286

Score = 103 (47.8 bits)
Expect = 2.1e-103
Sum P(4) = 2.1e-103
Identities = 22/40 (55%)
Positives = 26/40 (65%)

Query:    45 GKRFVEDVWSRPGGVCVHSRVLQDGNVFEKAGVNVSAVIG 84
             G  FVED W R  G    SRVL++G +FE+AGVN S V G
Subject:  28 GANFVEDSWRREAGGGGRSRVLRNGGIFEQAGVNFSHVHG 67

Score = 88 (40.9 bits)
Expect = 2.1e-103
Sum P(4) = 2.1e-103
Identities = 15/32 (46%)
Positives = 21/32 (65%)

Query:   113 FFSAGISSVLHPKNPFAPTLHFNYRYFETDAP 144
             F + G+S V+HP NP+ PT H N R+F  + P
Subject:  86 FEAMGVSLVVHPHNPYIPTSHANVRFFIAEKP 117

Score = 40 (18.6 bits)
Expect = 2.1e-103
Sum P(4) = 2.1e-103
Identities = 7/16 (43%)
Positives = 10/16 (62%)

Query:    29 RVQGEICAALEEADGS 44
             R+Q +IC  L   DG+
Subject:  14 RLQDDICQTLSAVDGA 29

Accession: P43898

COPROPORPHYRINOGEN III OXIDASE, AEROBIC (EC 1.3.3.3) (COPROPORPHYRINOGENASE) (COPROGEN OXIDASE).


Length = 305

Score = 578 (268.4 bits)
Expect = 4.4e-102
Sum P(3) = 4.4e-102
Identities = 102/178 (57%)
Positives = 127/178 (71%)

Query:   154 WWFGGGTDLTPSYLIEEDVKHFHSVQKQTCDKFDPSFYPRFKKWCDDYFYIKHRNERRGL 213
             WWFGGG DLTP Y  EED  H+H V +  C  F    YPR+K+WCD YF++KHRNE RG+
Subject: 124 WWFGGGFDLTPYYAHEEDCVHWHRVARDACAPFGADVYPRYKEWCDRYFHLKHRNEPRGI 183
Query:   214 GGIFFDDLNDYDQDMLLNFATECAGSVIPAYIPIIERRKDTPFNEEQKAWQQVRRGRYVE 273
             GG+FFDDLN +D D    F      + I AY+PI++RRK TPF+E Q+ +Q  RRGRYVE
Subject: 184 GGLFFDDLNQWDFDTCFAFIRAIGDAYIDAYLPIVQRRKHTPFDERQREFQAYRRGRYVE 243
Query:   274 FNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHKPEEGSEEWKLLDACINPKEWL 331
             FNLV+DRGT FGL++GGR ESIL+SLP   RW YD KPE GSEE +L +  +  ++WL
Subject: 244 FNLVFDRGTLFGLQSGGRTESILMSLPPQVRWGYDWKPEPGSEEARLTEYFLADRDWL 301

Score = 107 (49.7 bits)
Expect = 4.4e-102
Sum P(3) = 4.4e-102
Identities = 22/45 (48%)
Positives = 26/45 (57%)

Query:    40 EADGSGKRFVEDVWSRPGGVCVHSRVLQDGNVFEKAGVNVSAVIG 84
             EA+    RF ED W RP G    +RV+ DG + EK GVN S V G
Subject:  24 EAEDGKARFAEDAWERPAGGGGRTRVIGDGALIEKGGVNFSHVFG 68

Score = 84 (39.0 bits)
Expect = 4.4e-102
Sum P(3) = 4.4e-102
Identities = 15/36 (41%)
Positives = 22/36 (61%)

Query:   113 FFSAGISSVLHPKNPFAPTLHFNYRYFETDAPKDVP 148
             F + G+S V+HP+NP  PT H N R+F  +   + P
Subject:  87 FQALGVSLVIHPENPHVPTSHANVRFFCAEKEGEEP 122

Score = 47 (21.8 bits)
Expect = 9.2e-94
Sum P(3) = 9.2e-94
Identities = 9/17 (52%)
Positives = 11/17 (64%)

Query:    30 VQGEICAALEEADGSGK 46
             +Q  ICAALE  DG  +
Subject:  15 LQDRICAALEAEDGKAR 31

Accession: P36553

COPROPORPHYRINOGEN III OXIDASE, AEROBIC (EC 1.3.3.3) (COPROPORPHYRINOGENASE) (COPROGEN OXIDASE).


Length = 299

Score = 548 (254.5 bits)
Expect = 2.5e-98
Sum P(3) = 2.5e-98
Identities = 97/170 (57%)
Positives = 119/170 (70%)

Query:   148 PGAPRSWWFGGGTDLTPSYLIEEDVKHFHSVQKQTCDKFDPSFYPRFKKWCDDYFYIKHR 207
             PGA   WWFGGG DLTP Y  EED  H+H   +  C  F    YPR+KKWCD+YFY+KHR
Subject: 117 PGADPVWWFGGGFDLTPFYGFEEDAIHWHRTARDLCLPFGEDVYPRYKKWCDEYFYLKHR 176
Query:   208 NERRGLGGIFFDDLNDYDQDMLLNFATECAGSVIPAYIPIIERRKDTPFNEEQKAWQQVR 267
             NE+RG+GG+FFDDLN  D D    F          AY+PI+ERRK   + E ++ +Q  R
Subject: 177 NEQRGIGGLFFDDLNTPDFDRCFAFMQAVGKGYTDAYLPIVERRKAMAYGERERNFQLYR 236
Query:   268 RGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHKPEEGSEE 317
             RGRYVEFNLV+DRGT FGL+TGGR ESIL+S+P   RWEYD++P++GS E
Subject: 237 RGRYVEFNLVWDRGTLFGLQTGGRTESILMSMPPLVRWEYDYQPKDGSPE 286

Score = 105 (48.8 bits)
Expect = 2.5e-98
Sum P(3) = 2.5e-98
Identities = 23/40 (57%)
Positives = 26/40 (65%)

Query:    45 GKRFVEDVWSRPGGVCVHSRVLQDGNVFEKAGVNVSAVIG 84
             G  FVED W R  G    SRVL++G VFE+AGVN S V G
Subject:  28 GAEFVEDSWQREAGGGGRSRVLRNGGVFEQAGVNFSHVHG 67

Score = 89 (41.3 bits)
Expect = 2.5e-98
Sum P(3) = 2.5e-98
Identities = 15/32 (46%)
Positives = 21/32 (65%)

Query:   113 FFSAGISSVLHPKNPFAPTLHFNYRYFETDAP 144
             F + G+S V+HP NP+ PT H N R+F  + P
Subject:  86 FEAMGVSLVVHPHNPYVPTSHANVRFFIAEKP 117

Accession: P00218

FERREDOXIN.


Length = 142

Score = 50 (23.2 bits)
Expect = 1.6
Sum P(2) = 0.79
Identities = 8/11 (72%)
Positives = 10/11 (90%)

Query:   308 DHKPEEGSEEW 318
             DHK ++GSEEW
Subject:  97 DHKIQKGSEEW 107

Score = 44 (20.4 bits)
Expect = 1.6
Sum P(2) = 0.79
Identities = 9/27 (33%)
Positives = 13/27 (48%)

Query:    81 AVIGVCPRSAYRAAKGAAKNGAADGHK 107
             A + VCP + Y       K+G  + HK
Subject:  73 ACMDVCPVNLYEWNLNPGKSGTGNDHK 99

Accession: P15502

ELASTIN PRECURSOR (TROPOELASTIN).


Length = 730

Score = 61 (28.3 bits)
Expect = 4.8
P = 0.99
Identities = 14/33 (42%)
Positives = 18/33 (54%)

Query:    85 VCPRSAYRAAKGAAKNGAADGHKAGPVPFFSAG 117
             V P +A +AA  AAK GA  G   G +P +  G
Subject: 368 VSPEAAAKAAAKAAKYGARPGVGVGGIPTYGVG 400

Accession: P33422

VP6 PROTEIN (MINOR INNER CORE PROTEIN VP6).


Length = 301

Score = 59 (27.4 bits)
Expect = 8.3
P = 1.0
Identities = 11/32 (34%)
Positives = 18/32 (56%)

Query:    11 GSGAGSGSVRERFEGMIRRVQGEICAALEEAD 42
             GSG+G+   RER    + R  G++C  + + D
Subject:  60 GSGSGAKGFRERANENVDRGDGKVCGGVGDVD 91

Accession: P20126

RNA REPLICASE POLYPROTEIN (EC 2.7.7.48).


Length = 1839

Score = 59 (27.4 bits)
Expect = 9.5
P = 1.0
Identities = 12/33 (36%)
Positives = 17/33 (51%)

Query:   175 FHSVQKQTCDKFDPSFYPRFKKWCDDYFYIKHR 207
             +HS    + + F PS   RFK + D Y +  HR
Subject:1065 YHSTSPHSSNHFLPSEVHRFKSYIDCYCFWSHR 1097

Parameters:
  B=50
  H=1
  V=500
  -ctxfactor=1.00
  E=10
  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.140   0.448    same    same    same
  Query
  Frame  MatID  Length  Eff.Length   E    S W   T  X     E2  S2
   +0      0      331       331      10. 59 3  11 22    0.19 34
Statistics:
  Query          Expected         Observed           HSPs       HSPs
  Frame  MatID  High Score       High Score       Reportable  Reported
   +0      0    63 (29.3 bits)  1179 (547.5 bits)      34         34
  Query         Neighborhd  Word      Excluded    Failed   Successful  Overlaps
  Frame  MatID   Words      Hits        Hits    Extensions Extensions  Excluded
   +0      0     10575    16593547     3770293    12806057    17197        28
  Database:  sp.prot
    Release date:  unknown
    Posted date:  11:35 PM CDT Aug 21, 1997
  # of letters in database:  21,210,388
  # of sequences in database:  59,021
  # of database sequences satisfying E:  11
  No. of states in DFA:  575 (57 KB)
  Total size of DFA:  163 KB (192 KB)
  Time to generate neighborhood:  0.02u 0.01s 0.03t  Real: 00:00:00
  Time to search database:  25.61u 0.08s 25.69t  Real: 00:00:26
  Total cpu time:  25.64u 0.16s 25.80t  Real: 00:00:26


Copyright (C) 1997, Board of Trustees of the University of Illinois.