Accession: P36886
PHOTOSYSTEM I REACTION CENTRE SUBUNIT X PRECURSOR
(LIGHT-HARVESTING COMPLEX I 7 KD PROTEIN) (PSI-K).
Length = 131
Score = 656 (303.7 bits)
Expect = 1.6e-87
P = 1.6e-87
Identities = 131/131 (100%)
Positives = 131/131 (100%)
Query: 1 MASQLSAMTSVPQFHGLRTYSSPRSMATLPSLRRRRSQGIRCDYIGSSTNLIMVTTTTLM 60
MASQLSAMTSVPQFHGLRTYSSPRSMATLPSLRRRRSQGIRCDYIGSSTNLIMVTTTTLM
Subject: 1 MASQLSAMTSVPQFHGLRTYSSPRSMATLPSLRRRRSQGIRCDYIGSSTNLIMVTTTTLM 60
Query: 61 LFAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACGAVGHIMGVGIVLGL 120
LFAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACGAVGHIMGVGIVLGL
Subject: 61 LFAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACGAVGHIMGVGIVLGL 120
Query: 121 KNTGVLDQIIG 131
KNTGVLDQIIG
Subject: 121 KNTGVLDQIIG 131
Accession: P14225
PHOTOSYSTEM I REACTION CENTRE SUBUNIT X PRECURSOR
(LIGHT-HARVESTING COMPLEX I 8.4 KD PROTEIN) (PSI-K) (P37 PROTEIN).
Length = 113
Score = 134 (62.0 bits)
Expect = 1.9e-13
P = 1.9e-13
Identities = 32/76 (42%)
Positives = 39/76 (51%)
Query: 51 LIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACGAVGH 110
++ TT TL N A L +G+ + DPAGFT+ D LA GA GH
Subject: 38 MVASTTATLAAARFGLAPTVKKNTTAGLKLVDSKNSAGVISNDPAGFTIVDVLAMGAAGH 97
Query: 111 IMGVGIVLGLKNTGVL 126
+GVGIVLGLK G L
Subject: 98 GLGVGIVLGLKGIGAL 113
Score = 127 (58.8 bits)
Expect = 1.2e-11
P = 1.2e-11
Identities = 26/39 (66%)
Positives = 30/39 (76%)
Query: 44 YIGSSTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKL 82
+IGSSTNLIMV +TT L A RFGLAP+ + TAGLKL
Subject: 29 FIGSSTNLIMVASTTATLAAARFGLAPTVKKNTTAGLKL 67
Accession: P42051
PHOTOSYSTEM I REACTION CENTRE SUBUNIT X (PHOTOSYSTEM I
4.5 KD PROTEIN) (PSI-K) (PS I SUBUNIT 12) (FRAGMENT).
Length = 33
Score = 137 (63.4 bits)
Expect = 2.1e-13
P = 2.1e-13
Identities = 27/32 (84%)
Positives = 30/32 (93%)
Query: 43 DYIGSSTNLIMVTTTTLMLFAGRFGLAPSANR 74
DYIGS TN+IMV +T+LMLFAGRFGLAPSANR
Subject: 2 DYIGSPTNVIMVISTSLMLFAGRFGLAPSANR 33
Accession: P14627
PHOTOSYSTEM I REACTION CENTRE SUBUNIT X (LIGHT-HARVESTING
5 KD PROTEIN) (PSI-K) (FRAGMENT).
Length = 29
Score = 128 (59.3 bits)
Expect = 6.4e-12
P = 6.4e-12
Identities = 25/28 (89%)
Positives = 27/28 (96%)
Query: 43 DYIGSSTNLIMVTTTTLMLFAGRFGLAP 70
D+IGSSTNLIMVT+TTLMLFAGRFGL P
Subject: 2 DFIGSSTNLIMVTSTTLMLFAGRFGLXP 29
Accession: P51370
PHOTOSYSTEM I REACTION CENTRE SUBUNIT X (PSI-K).
Length = 86
Score = 75 (34.7 bits)
Expect = 2.9e-08
Sum P(2) = 2.9e-08
Identities = 13/31 (41%)
Positives = 21/31 (67%)
Query: 96 GFTLADTLACGAVGHIMGVGIVLGLKNTGVL 126
GF L + LA ++GH++G +LGL N G++
Subject: 55 GFGLPELLATTSLGHVIGAASILGLSNVGLI 85
Score = 40 (18.5 bits)
Expect = 2.9e-08
Sum P(2) = 2.9e-08
Identities = 6/18 (33%)
Positives = 12/18 (66%)
Query: 51 LIMVTTTTLMLFAGRFGL 68
++M+T L + AGR+ +
Subject: 22 MVMITCNLLAIVAGRYAI 39
Accession: Q00327
PHOTOSYSTEM I REACTION CENTRE SUBUNIT V PRECURSOR
(PHOTOSYSTEM I 9 KD PROTEIN) (PSI-G).
Length = 143
Score = 79 (36.6 bits)
Expect = 1.5e-07
Sum P(2) = 1.5e-07
Identities = 15/34 (44%)
Positives = 21/34 (61%)
Query: 89 LQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKN 122
L++ DP GF L D LA G++GHI+ I+ N
Subject: 102 LKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSN 135
Score = 51 (23.6 bits)
Expect = 1.5e-07
Sum P(2) = 1.5e-07
Identities = 12/28 (42%)
Positives = 17/28 (60%)
Query: 1 MASQLSAMTSVPQFHGLRTYSSPRSMAT 28
MA+ +A+ S P GLR SPR+ A+
Subject: 1 MATSTAAVLSPPAVAGLRLAPSPRAAAS 28
Accession: P31567
HYPOTHETICAL 7.4 KD PROTEIN.
Length = 69
Score = 61 (28.2 bits)
Expect = 5.5e-07
Sum P(2) = 5.5e-07
Identities = 13/32 (40%)
Positives = 20/32 (62%)
Query: 95 AGFTLADTLACGAVGHIMGVGIVLGLKNTGVL 126
A LA+ LA ++GHI+ VLGLK+ ++
Subject: 37 ANINLAELLASMSLGHIISSATVLGLKSLNLI 68
Score = 46 (21.3 bits)
Expect = 5.5e-07
Sum P(2) = 5.5e-07
Identities = 8/29 (27%)
Positives = 15/29 (51%)
Query: 45 IGSSTNLIMVTTTTLMLFAGRFGLAPSAN 73
I STN+I + T+ + G++ + N
Subject: 3 IAVSTNIIFIVVNTICVILGKYSVQNKKN 31
Accession: P12357
PHOTOSYSTEM I REACTION CENTRE SUBUNIT V PRECURSOR
(PHOTOSYSTEM I 9 KD PROTEIN) (PSI-G).
Length = 167
Score = 77 (35.6 bits)
Expect = 1.7e-05
Sum P(2) = 1.7e-05
Identities = 14/34 (41%)
Positives = 21/34 (61%)
Query: 89 LQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKN 122
L++ DP GF + D LA G++GHI+ I+ N
Subject: 127 LKSNDPVGFNIVDVLAWGSIGHIVAYYILATASN 160
Score = 42 (19.4 bits)
Expect = 1.7e-05
Sum P(2) = 1.7e-05
Identities = 9/19 (47%)
Positives = 13/19 (68%)
Query: 48 STNLIMVTTTTLMLFAGRF 66
S +L++ +T L LF GRF
Subject: 72 SPSLVISLSTGLSLFLGRF 90
Accession: P17226
PHOTOSYSTEM I REACTION CENTRE SUBUNIT X (LIGHT-HARVESTING 5
KD PROTEIN) (PSI-K) (FRAGMENT).
Length = 20
Score = 82 (38.0 bits)
Expect = 6.6e-05
P = 6.6e-05
Identities = 16/20 (80%)
Positives = 19/20 (95%)
Query: 43 DYIGSSTNLIMVTTTTLMLF 62
D+IGSSTN+IMV +TTLMLF
Subject: 1 DFIGSSTNVIMVASTTLMLF 20
Accession: P14224
PHOTOSYSTEM I REACTION CENTRE SUBUNIT V PRECURSOR
(LIGHT-HARVESTING COMPLEX I 10 KD PROTEIN) (PSI-G) (P35 PROTEIN).
Length = 126
Score = 73 (33.8 bits)
Expect = 0.013
P = 0.013
Identities = 13/36 (36%)
Positives = 20/36 (55%)
Query: 82 LEARESGLQTGDPAGFTLADTLACGAVGHIMGVGIV 117
L+ + T DPAGF + D GA+GH +G ++
Subject: 80 LQKNSTIFATNDPAGFNIIDVAGWGALGHAVGFAVL 115
Accession: P20453
PHOTOSYSTEM I REACTION CENTRE SUBUNIT X PRECURSOR
(LIGHT-HARVESTING 8.0 KD POLYPEPTIDE).
Length = 83
Score = 67 (31.0 bits)
Expect = 0.061
P = 0.060
Identities = 13/31 (41%)
Positives = 19/31 (61%)
Query: 96 GFTLADTLACGAVGHIMGVGIVLGLKNTGVL 126
GF L + LA + GH++ G+V GL+ G L
Subject: 53 GFGLPELLATTSFGHLLAAGVVSGLQYAGAL 83
Accession: P39365
HYPOTHETICAL PHOSPHOTRANSFERASE ENZYME II, C COMPONENT IN
FECI-FIMB INTERGENIC REGION (F437).
Length = 437
Score = 60 (27.8 bits)
Expect = 1.8
P = 0.83
Identities = 11/34 (32%)
Positives = 23/34 (67%)
Query: 84 ARESGLQTGDPAGFTLADTLACGAVGHIMGVGIV 117
A+ S L G+ G+++++ ++ G +G ++ VGIV
Subject: 390 AQISALSVGNMFGWSISELMSLGIIGVVVAVGIV 423
Accession: P07659
DNA-DIRECTED RNA POLYMERASE (EC 2.7.7.6).
Length = 884
Score = 58 (26.9 bits)
Expect = 3.6
P = 0.97
Identities = 11/30 (36%)
Positives = 18/30 (60%)
Query: 60 MLFAGRFGLAPSANRKATAGLKLEARESGL 89
M+F G+F L P+ N +G+ +ESG+
Subject: 750 MIFLGQFRLQPTINTLKDSGIDAHKQESGI 779
Accession: P53606
FLAGELLIN.
Length = 474
Score = 57 (26.4 bits)
Expect = 4.8
P = 0.99
Identities = 14/37 (37%)
Positives = 19/37 (51%)
Query: 66 FGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADT 102
+ A + N AGL++ A +G QT P G T DT
Subject: 219 YAKAAAINGAGIAGLQVTAVTAGTQTVGPIGGTAGDT 255
Accession: P14199
REF(2)P PROTEIN.
Length = 599
Score = 57 (26.4 bits)
Expect = 4.9
P = 0.99
Identities = 14/42 (33%)
Positives = 17/42 (40%)
Query: 68 LAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACGAVG 109
LAP KAT A DP+ FT+ D + C G
Subject: 90 LAPVEEPKATKQEGSSANAEAPSVDDPSNFTIHDAVECDGCG 131
Accession: P48598
EUKARYOTIC INITIATION FACTOR 4E (EIF-4E) (MRNA
CAP-BINDING PROTEIN).
Length = 259
Score = 45 (20.8 bits)
Expect = 6.5
Sum P(2) = 1.0
Identities = 9/25 (36%)
Positives = 14/25 (56%)
Query: 82 LEARESGLQTGDPAGFTLADTLACG 106
++ +E +TG+PAG T T G
Subject: 45 VKPKEDPQETGEPAGNTATTTAPAG 69
Score = 39 (18.1 bits)
Expect = 6.5
Sum P(2) = 1.0
Identities = 5/13 (38%)
Positives = 11/13 (84%)
Query: 14 FHGLRTYSSPRSM 26
FH ++ +++P+SM
Subject: 5 FHRMKNFANPKSM 17
Accession: Q10961
PROBABLE [PROTEIN-PII] URIDYLYLTRANSFERASE (EC 2.7.7.59)
(PII URIDYLYL-TRANSFERASE) (URIDYLYL REMOVING ENZYME) (UTASE).
Length = 808
Score = 47 (21.8 bits)
Expect = 9.2
Sum P(3) = 1.0
Identities = 14/43 (32%)
Positives = 17/43 (39%)
Query: 62 FAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLA 104
+AG LA A + GL L + TG P G LA
Subject: 323 YAGEIVLARDAEPEHDPGLVLRVAAASADTGLPIGAATLSRLA 365
Score = 35 (16.2 bits)
Expect = 9.2
Sum P(3) = 1.0
Identities = 8/15 (53%)
Positives = 10/15 (66%)
Query: 101 DTLACGAVGHIMGVG 115
D LA GA+ H +G G
Subject: 452 DLLALGALLHDIGKG 466
Score = 31 (14.4 bits)
Expect = 9.2
Sum P(3) = 1.0
Identities = 7/17 (41%)
Positives = 10/17 (58%)
Query: 25 SMATLPSLRRRRSQGIR 41
S A + +RR+ GIR
Subject: 147 SFALIDGVRRQWRNGIR 163
Accession: P07916
ELASTIN PRECURSOR (TROPOELASTIN) (FRAGMENT).
Length = 750
Score = 55 (25.5 bits)
Expect = 9.8
P = 1.0
Identities = 20/69 (28%)
Positives = 27/69 (39%)
Query: 63 AGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKN 122
AG GL A A + L+ AG L G +G + GVG+ GL
Subject: 84 AGVGGLGAGLGAFPGAAFPGAASAAALKAAAKAGAGLGGVGGIGGLGGVGGVGVPGGLGV 143
Query: 123 TGVLDQIIG 131
GV+ +G
Subject: 144 PGVVQPGVG 152
Parameters:
B=50
H=1
V=500
-ctxfactor=1.00
E=10
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.378 same same same
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 131 131 10. 56 3 11 22 0.18 31
Statistics:
Query Expected Observed HSPs HSPs
Frame MatID High Score High Score Reportable Reported
+0 0 59 (27.3 bits) 656 (303.7 bits) 26 26
Query Neighborhd Word Excluded Failed Successful Overlaps
Frame MatID Words Hits Hits Extensions Extensions Excluded
+0 0 1893 4894316 890232 3990384 13700 34
Database: sp.prot
Release date: unknown
Posted date: 11:35 PM CDT Aug 21, 1997
# of letters in database: 21,210,388
# of sequences in database: 59,021
# of database sequences satisfying E: 18
No. of states in DFA: 484 (48 KB)
Total size of DFA: 69 KB (128 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Real: 00:00:00
Time to search database: 9.23u 1.56s 10.79t Real: 00:00:14
Total cpu time: 9.26u 1.95s 11.21t Real: 00:00:15