Accession: P20143
PHOTOSYSTEM I REACTION CENTRE SUBUNIT VI PRECURSOR
(LIGHT-HARVESTING COMPLEX I 11 KD PROTEIN) (PSI-H).
Length = 143
Score = 720 (329.0 bits)
Expect = 3.5e-95
P = 3.5e-95
Identities = 143/143 (100%)
Positives = 143/143 (100%)
Query: 1 MASLVAVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLD 60
MASLVAVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLD
Subject: 1 MASLVAVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLD 60
Query: 61 DIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIGGGSLVAYVSASA 120
DIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIGGGSLVAYVSASA
Subject: 61 DIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIGGGSLVAYVSASA 120
Query: 121 SPDLLPIKKGPQLPPTPGPRGKI 143
SPDLLPIKKGPQLPPTPGPRGKI
Subject: 121 SPDLLPIKKGPQLPPTPGPRGKI 143
Accession: P22181
PHOTOSYSTEM I REACTION CENTRE SUBUNIT VI PRECURSOR
(LIGHT-HARVESTING COMPLEX I 11 KD PROTEIN) (PSI-H) (GOS5 PROTEIN).
Length = 142
Score = 485 (221.6 bits)
Expect = 1.6e-84
Sum P(2) = 1.6e-84
Identities = 93/106 (87%)
Positives = 96/106 (90%)
Query: 38 TRRARGAAVVAKYGEKSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTK 97
T R AAVVAKYGEKSVYFDL+DI NTTGQWDLY SDAPSPYN LQSKFF TFA PFTK
Subject: 37 TTRRPRAAVVAKYGEKSVYFDLEDIGNTTGQWDLYASDAPSPYNPLQSKFFETFAGPFTK 96
Query: 98 RGLLLKFLLIGGGSLVAYVSASASPDLLPIKKGPQLPPTPGPRGKI 143
RGLLLKFLL+GGGSLVAYVSASASPDLLPIKKGP +PPTPGPRGKI
Subject: 97 RGLLLKFLLLGGGSLVAYVSASASPDLLPIKKGPHVPPTPGPRGKI 142
Score = 166 (75.9 bits)
Expect = 1.6e-84
Sum P(2) = 1.6e-84
Identities = 36/46 (78%)
Positives = 39/46 (84%)
Query: 1 MASLVAVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAV 46
MASLVAVQP AVKGL+GSSISGRKLAVRPS A+ R+TRR R A V
Subject: 1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVV 46
Accession: P22179
PHOTOSYSTEM I REACTION CENTRE SUBUNIT VI PRECURSOR
(LIGHT-HARVESTING COMPLEX I 11 KD PROTEIN) (PSI-H).
Length = 144
Score = 441 (201.5 bits)
Expect = 2.2e-68
Sum P(2) = 2.2e-68
Identities = 83/112 (74%)
Positives = 93/112 (83%)
Query: 32 AAVSRSTRRARGAAVVAKYGEKSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQSKFFNTF 91
A S R A+VAKYG+KSVYFDL+DIANTTGQWD+YGSDAPSPYN LQSKFF TF
Subject: 33 ARQSFKLNNVRSGAIVAKYGDKSVYFDLEDIANTTGQWDVYGSDAPSPYNSLQSKFFETF 92
Query: 92 AAPFTKRGLLLKFLLIGGGSLVAYVSASASPDLLPIKKGPQLPPTPGPRGKI 143
AAPFTKRGLLLKFL++GGGSL+ YVSA+A D+LPI +GPQ PP GPRGKI
Subject: 93 AAPFTKRGLLLKFLILGGGSLLTYVSANAPQDVLPITRGPQQPPKLGPRGKI 144
Score = 92 (42.0 bits)
Expect = 2.2e-68
Sum P(2) = 2.2e-68
Identities = 17/30 (56%)
Positives = 25/30 (83%)
Query: 1 MASLVAVQPAAVKGLSGSSISGRKLAVRPS 30
+A+L AVQP +KGL+GSSI+G KL ++P+
Subject: 4 LATLAAVQPTTLKGLAGSSIAGTKLHIKPA 33
Accession: P20121
PHOTOSYSTEM I REACTION CENTRE SUBUNIT VI (LIGHT-HARVESTING
COMPLEX I 11 KD PROTEIN) (PSI-H) (FRAGMENT).
Length = 36
Score = 177 (80.9 bits)
Expect = 7.1e-20
P = 7.1e-20
Identities = 31/36 (86%)
Positives = 34/36 (94%)
Query: 49 KYGEKSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQ 84
KYG+KSVYFDL+DI NTTGQWDLYGSDAPSPY+ LQ
Subject: 1 KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36
Accession: P13352
PHOTOSYSTEM I REACTION CENTRE SUBUNIT VI PRECURSOR
(LIGHT-HARVESTING COMPLEX I 11 KD PROTEIN) (PSI-H) (P28 PROTEIN).
Length = 130
Score = 144 (65.8 bits)
Expect = 1.8e-13
P = 1.8e-13
Identities = 30/82 (36%)
Positives = 41/82 (50%)
Query: 42 RGAAVVAKYGEKSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLL 101
+ V AKYGE S YFDL D+ NTTG WD+YG D Y Q+KFF ++R L
Subject: 24 KAVRVSAKYGENSRYFDLQDMENTTGSWDMYGVDEKKRYPDNQAKFFTQATDIISRRESL 83
Query: 102 LKFLLIGGGSLVAYVSASASPD 123
+ + G + + + D
Subject: 84 RALVALSGIAAIVTYGLKGAKD 105
Accession: P42050
PHOTOSYSTEM I REACTION CENTRE SUBUNIT VI (PHOTOSYSTEM I
7.6 KD PROTEIN) (PSI-H) (PS I SUBUNIT 9B) (FRAGMENT).
Length = 24
Score = 74 (33.8 bits)
Expect = 0.0013
P = 0.0013
Identities = 14/23 (60%)
Positives = 16/23 (69%)
Query: 50 YGEKSVYFDLDDIANTTGQWDLY 72
Y +KSVYFDL+D NT GQ Y
Subject: 2 YXDKSVYFDLEDKGNTXGQXXXY 24
Accession: P06226
GENE 33 PROTEIN.
Length = 101
Score = 65 (29.7 bits)
Expect = 0.27
P = 0.24
Identities = 11/30 (36%)
Positives = 20/30 (66%)
Query: 58 DLDDIANTTGQWDLYGSDAPSPYNGLQSKF 87
+L+ + N T +D+Y S+A + GL++KF
Subject: 7 ELEKVRNHTEDYDVYNSEAERTFRGLKAKF 36
Accession: P35212
GAP JUNCTION ALPHA-4 PROTEIN (CONNEXIN 37) (CX37).
Length = 332
Score = 37 (16.9 bits)
Expect = 0.63
Sum P(4) = 0.47
Identities = 6/7 (85%)
Positives = 6/7 (85%)
Query: 67 GQWDLYG 73
GQW LYG
Subject: 171 GQWRLYG 177
Score = 36 (16.5 bits)
Expect = 0.63
Sum P(4) = 0.47
Identities = 8/18 (44%)
Positives = 9/18 (50%)
Query: 124 LLPIKKGPQLPPTPGPRG 141
L P +GP PP P G
Subject: 265 LPPRGQGPSSPPCPTYNG 282
Score = 35 (16.0 bits)
Expect = 0.63
Sum P(4) = 0.47
Identities = 7/13 (53%)
Positives = 10/13 (76%)
Query: 90 TFAAPFTKRGLLL 102
T + P+T +GLLL
Subject: 253 TSSDPYTDQGLLL 265
Score = 31 (14.2 bits)
Expect = 0.63
Sum P(4) = 0.47
Identities = 7/27 (25%)
Positives = 14/27 (51%)
Query: 1 MASLVAVQPAAVKGLSGSSISGRKLAV 27
+ +L A P + L+G + K++V
Subject: 112 LRALPAKDPQVERALAGIELQMAKISV 138
Accession: P17425
HYDROXYMETHYLGLUTARYL-COA SYNTHASE, CYTOPLASMIC (EC
4.1.3.5) (HMG-COA SYNTHASE) (3-HYDROXY-3-METHYLGLUTARYL COENZYME A
SYNTHASE).
Length = 520
Score = 41 (18.7 bits)
Expect = 4.5
Sum P(3) = 0.99
Identities = 8/13 (61%)
Positives = 9/13 (69%)
Query: 126 PIKKGPQLPPTPG 138
P KK P+LP T G
Subject: 496 PAKKVPRLPATSG 508
Score = 38 (17.4 bits)
Expect = 4.5
Sum P(3) = 0.99
Identities = 11/37 (29%)
Positives = 17/37 (45%)
Query: 53 KSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQSKFFN 89
KSV +L + +G D+ G D + G + FN
Subject: 102 KSVKSNLMQLFEESGNTDIEGIDTTNACYGGTAAVFN 138
Score = 37 (16.9 bits)
Expect = 4.5
Sum P(3) = 0.99
Identities = 6/20 (30%)
Positives = 11/20 (55%)
Query: 103 KFLLIGGGSLVAYVSASASP 122
++ L+ G + Y S +A P
Subject: 151 RYALVVAGDIAIYASGNARP 170
Accession: P06111
OUTER MEMBRANE PROTEIN PRECURSOR.
Length = 257
Score = 58 (26.5 bits)
Expect = 4.6
P = 0.99
Identities = 18/74 (24%)
Positives = 31/74 (41%)
Query: 15 LSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLDDIANTTGQWDLYGS 74
++ S I+G LA + + T + AA V +G + D D + +G
Subject: 8 ITASLIAGNALAAQTYIRNGNIYTHEGQWAAEVGAFGSTDLLKDQDKSYGALLNFGYHGE 67
Query: 75 DAPSPYNGLQSKFF 88
D + +GL +FF
Subject: 68 DFNADLSGLNYRFF 81
Accession: Q03200
LIGHT REGULATED PROTEIN PRECURSOR.
Length = 128
Score = 57 (26.0 bits)
Expect = 5.0
P = 0.99
Identities = 16/41 (39%)
Positives = 24/41 (58%)
Query: 1 MASLVAVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRA 41
+ L AV PAAVKG S + R++A+R +AA + + A
Subject: 8 VVGLSAVLPAAVKGRSLQIQAPRRVALRVRAAAAAVAVEAA 48
Accession: P23239
DESMIN.
Length = 458
Score = 58 (26.5 bits)
Expect = 5.1
P = 0.99
Identities = 17/35 (48%)
Positives = 20/35 (57%)
Query: 13 KGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVV 47
KG S SS+S R V S+AA S S+ RA A V
Subject: 34 KGASSSSVSSRVYQVSRSTAAPSLSSFRATRVAPV 68
Accession: P18314
UREASE ALPHA SUBUNIT (EC 3.5.1.5) (UREA AMIDOHYDROLASE).
Length = 567
Score = 58 (26.5 bits)
Expect = 5.2
P = 0.99
Identities = 12/29 (41%)
Positives = 16/29 (55%)
Query: 108 GGGSLVAYVSASASPDLLPIKKGPQLPPT 136
GGG ++A A P++LP P LP T
Subject: 277 GGGHAPDIITACAHPNILPSSTNPTLPYT 305
Accession: Q10136
HYPOTHETICAL 61.1 KD PROTEIN C23E2.03C IN CHROMOSOME I.
Length = 569
Score = 58 (26.5 bits)
Expect = 5.2
P = 0.99
Identities = 10/22 (45%)
Positives = 14/22 (63%)
Query: 116 VSASASPDLLPIKKGPQLPPTP 137
VS+++ P PI P +PPTP
Subject: 257 VSSASDPPQTPISMSPPIPPTP 278
Parameters:
B=50
H=1
V=500
-ctxfactor=1.00
E=10
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.384 same same same
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 143 143 10. 57 3 11 22 0.24 31
Statistics:
Query Expected Observed HSPs HSPs
Frame MatID High Score High Score Reportable Reported
+0 0 61 (27.9 bits) 720 (329.0 bits) 21 21
Query Neighborhd Word Excluded Failed Successful Overlaps
Frame MatID Words Hits Hits Extensions Extensions Excluded
+0 0 2441 6061212 1271091 4769088 21033 187
Database: sp.prot
Release date: unknown
Posted date: 11:35 PM CDT Aug 21, 1997
# of letters in database: 21,210,388
# of sequences in database: 59,021
# of database sequences satisfying E: 14
No. of states in DFA: 487 (48 KB)
Total size of DFA: 75 KB (128 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Real: 00:00:00
Time to search database: 10.69u 0.27s 10.96t Real: 00:00:12
Total cpu time: 10.71u 0.34s 11.05t Real: 00:00:12