Biology WorkBench

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GENBANK:HSU12621

LOCUS HSU12621 92 bp mRNA PRI 16-AUG-1995 DEFINITION Human beaded intermediate filament protein CP47 mRNA, 3' UTR. ACCESSION U12621 NID g607913 KEYWORDS . SOURCE human. ORGANISM Homo sapiens Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 92) AUTHORS Hess,J.F., Casselman,J.T. and FitzGerald,P.G. TITLE Chromosomal locations of the genes for the beaded filament proteins CP 115 and CP 47 JOURNAL Curr. Eye Res. 14 (1), 11-18 (1995) MEDLINE 95236820 REFERENCE 2 (bases 1 to 92) AUTHORS Hess,J.F. TITLE Direct Submission JOURNAL Submitted (25-JUL-1994) John F. Hess, Cell Biology and Human Anatomy, School of Medicine, University of California at Davis, Davis, CA 95616-8643, USA FEATURES Location/Qualifiers source 1..92 organism="Homo sapiens" db_xref="taxon:9606" map="3q21-26" chromosome="3" cell_type="lens fiber cell" tissue_type="ocular lens" dev_stage="adult" 3'UTR <1..>92 BASE COUNT 24 a 26 c 17 g 25 t >HSU12621 tggagaaacttcctctttttcatgaagaaaacacccttcctcaacagctgacccaagaag ttgcttgaggagctttctcctgagctccagtc

GENBANK:SOCP47

LOCUS SOCP47 1542 bp DNA PLN 15-NOV-1996 DEFINITION S.oleracea chloroplast DNA for CP47 gene. ACCESSION X98877 NID g1420851 KEYWORDS CP47 gene. SOURCE Spinacia oleracea. ORGANISM Chloroplast Spinacia oleracea Eukaryotae; mitochondrial eukaryotes; Viridiplantae; Charophyta/Embryophyta group; Embryophyta; Magnoliophyta; Magnoliopsida; Caryophyllales; Chenopodiaceae; Spinacia. REFERENCE 1 (bases 1 to 1542) AUTHORS Witty,M., Barber,J. and Hiller,R.G. TITLE Spinach CP47 is not anomalous among higher plants (Accession No.X98877) JOURNAL Plant Physiol. 112, 446-446 (1996) REFERENCE 2 (bases 1 to 1542) AUTHORS Witty,M. TITLE Direct Submission JOURNAL Submitted (28-JUN-1996) M. Witty, Imperial College, Biochemistry, Exhibition Road, London SW7 2AZ, UK COMMENT Ref [1]: Plant Gene Regsiter PGR96-071(1996). FEATURES Location/Qualifiers source 1..1542 organism="Spinacia oleracea" /chloroplast db_xref="taxon:3562" dev_stage="adult" tissue_type="leaf" gene 1..1536 gene="CP47"

CDS 1..1536 gene="CP47" codon_start=1 db_xref="PID:e251802" db_xref="PID:g1420852" translation="MKISGLPWYRVHTVVLNDPGRLISVHIMHTALVAGWAGSMALYE LAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITDPGIWSYEGVAGA HIMFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGVACFGFGAFH VTGLYGPGIWVSDPYGLTGKVQPVSPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLF HLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRY QWDQGYFQQEIYRRVSAGLAENQSFSEAWSKIPEKLAFYDYIGNNPAKGGLFRAGSMD NGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSP RGWFTFGHASFALLFFFGHIWHGSRTLFRDVFAGIDPDLDVQVEFGAFQKIGDPTTRR QGV" BASE COUNT 372 a 279 c 391 g 500 t >SOCP47 atgaagatctcgggtttgccttggtatcgtgttcatactgttgtattgaatgatcccggc cggttgatttctgtccatatcatgcatacagctctggttgctggttgggccggttcgatg gctctatatgaattagctgtttttgatccctctgaccccgttcttgatccaatgtggaga cagggtatgttcgttatacctttcatgactcgtttaggaataaccaattcgtggggcggt tggagtattacagggggtactataacggatcctggcatttggagttacgaaggtgtggcc ggagcgcatattatgttttcgggcttgtgctttttggccgctatttggcattgggtatat tgggatttagaaatattttcggatgaacgtacaggaaaaccttctttggatttgcctaag atttttggaattcatttatttctttccggggtggcttgttttggttttggtgcatttcat gtaacaggcttgtacgggcccggaatatgggtatccgatccttatggactaactggaaaa gtacaacctgtaagtccagcatggggcgtggaaggttttgatccttttgttccaggagga atagcctctcatcatattgcagcaggaacattaggtatattagcaggtctattccatctt agtgtccgtccgcctcaacgtctatacaaaggattacgtatgggcaacattgaaaccgtt ctttctagtagtatcgctgctgtcttttttgcagcttttgttgttgcgggaactatgtgg tatggttccgcaactaccccgatcgaattatttggccccactcgttatcaatgggatcag ggatactttcagcaagaaatataccgacgagtaagtgctgggctagccgaaaatcaaagt ttctcagaagcttggtcaaaaattcccgagaaattggctttttatgattacattggaaat aatccggcgaaagggggattatttagagcaggctcaatggacaacggcgatggaatagct gttggatggttaggacaccctatttttagagataaagaaggacgtgaactctttgtacga cgtatgcctactttttttgaaacctttccggtcgttttgatagatggggacggaattgtt cgagctgatgttccttttagaagagcagaatctaagtatagcgttgaacaagtaggtgta actgttgagttttacggcggcgaactaaacggagttagttatagcgatcctgctactgtc aaaaaatatgctagacgtgctcaattaggtgaaattttcgaattagaccgtgctactttg aaatcagatggtgtttttcgcagtagtccgaggggttggtttacttttggacatgcttcc tttgccctactcttcttcttcggacacatttggcatgggtctagaaccttgttcagagat gtttttgctgggattgaccccgatttggatgttcaagtagaatttggcgcattccaaaaa attggagatccaactacaagaagacaaggagtttaaggtacc

GENBANK:OHPHSYII

LOCUS OHPHSYII 2894 bp DNA PLN 12-SEP-1993 DEFINITION Oenothera hookeri plastid DNA for psbB, psbH and psbN genes for chlorophyll a-binding apoprotein, 10 kDa phosphoprotein, and unknown protein of photosystem II, respectively. ACCESSION X55900 NID g14146 KEYWORDS chlorophyll a-binding protein; phosphoprotein; photosynthesis; photosystem II; psbB gene; psbH gene; psbN gene. SOURCE Hooker's evening primrose. ORGANISM Chloroplast Oenothera hookeri Eukaryotae; mitochondrial eukaryotes; Viridiplantae; Charophyta/Embryophyta group; Embryophyta; Magnoliophyta; Magnoliopsida; Myrtanae; Myrtales; Onagraceae; Oenothera. REFERENCE 1 (bases 1 to 2894) AUTHORS Offermann-Steinhard,K. TITLE Direct Submission JOURNAL Submitted (10-SEP-1990) Offermann-Steinhard K., Heinrich-Heine-Universitaet, Institut fuer Entwicklungs und Molekularbiologie der Pflanzen, Universitaetstr 1, D-4000 Duesseldorf 1 REFERENCE 2 (bases 323 to 2894) AUTHORS Offermann-Steinhard,K. and Herrmann,R.G. TITLE Nucleotide sequences of psbB and psbH, the plastid encoded genes for CP47 and the 10 kDa phosphoprotein of photosystem II in Oenothera hookeri and argillicola JOURNAL Nucleic Acids Res. 18 (21), 6452 (1990) MEDLINE 91057156 FEATURES Location/Qualifiers source 1..2894 organism="Oenothera hookeri" /chloroplast db_xref="taxon:3943" repeat_unit 305..311 note="inverted repeat A" misc_feature 305..340 note="put. stem loop structure" repeat_unit 334..340 note="inverted repeat A'" promoter 345..350 note="put. -35 region (psbB)" promoter 369..374 note="put. -10 region (psbB)" precursor_RNA 381..>2083 note="psbB transcript" precursor_RNA 505..>2083 note="psbB transcript" RBS 546..549 note="put. rRNA binding site" repeat_unit 548..559 note="inverted repeat B" misc_feature 548..586 note="put. stem loop structure"

CDS 557..2083 note="psbB product, chlorophyll a-binding apoprotein (AA 1-508)" codon_start=1 db_xref="PID:g14147" db_xref="SWISS-PROT:P19819" translation="MGLPWYRVHTVVLNDPGRLLAVHIMHTALVAGWAGSMALYELAV FDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTVTNPGIWSYEGVAGSHIL FSGLCFLAAIWHWVYWDLAIFSDERTGKPSLDLPKIFGIHLFLSGLACFGFGAFHVTG LYGPGIWVSDPYGLTGEVQPVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFHLS VRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWD QGYFQQEIYRRVGAGLAKNQSLSEAWSKIPEKLAFYDYIGNNPAKGGLFRAGSMDSGD GIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESKYSV EQVGVTIEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGW FTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDTQVEFGAFQKLGDPTTRRQAV " repeat_unit 575..586 note="inverted repeat B'" misc_feature 1504..1531 note="put. stem loop structure" repeat_unit 1504..1512 note="inverted repeat C" repeat_unit 1523..1531 note="inverted repeat C'" misc_feature 2381..2395 note="inverted repeat D'" misc_feature 2381..2419 note="put. stem loop structure" repeat_unit 2400..2419 note="inverted repeat D'"

CDS complement(2420..2551) note="psbN product, unknown protein" codon_start=1 db_xref="PID:g14148" db_xref="SWISS-PROT:P12171" translation="METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHGD"

CDS 2658..2879 note="psbH product, 10 kDa phosphoprotein (AA 1-73)" codon_start=1 db_xref="PID:g14149" db_xref="SWISS-PROT:P19820" translation="MATQTAEESSRARPKKTGLGGLLKPLNSEYGKVAPGWGTTPLMG LAMALFAVFLSIILEIYNSSVLLDGISMN" BASE COUNT 778 a 533 c 665 g 918 t >OHPHSYII gagtttataaagaaataaagattttgagtcgcatcctgtatggtgagaaatatcatcagc ccagcaatgtgattcgcgacctcgaagtgaattgcgtcgcctaaaaagatggatctggtt cgataaagtacgttatacaggtcaacccaagtcgcgtcgtcttcctcttcatcttcttcg tctccgtcaagcaggaaagggattttaggcataccaatcggcataaaaataaaaagcgag caagaaaaccgcgaccctaaaagaagttaaagaagttagagtaaatgttttgttatcggc cttaggcgggtcgggctctctcatgtgtaatcaacccgcccccattgcgtattggtactt atcggatatagaatagatctgcttctcattgttcctacgaaccgaattgttacgttttta ctaaaaaaacaagaatataacaactattaatcctttctccgagagaatccaccgaaaagg ggaggtccagagcatcgtttttccaatgcaataaagttacatagtgtctatttttcgttg ataaaggggtatttacatgggtttgccttggtatcgtgtgcataccgtcgtattgaatga tcctggccgtttgctggctgtccatataatgcatacagctttggttgctggttgggccgg ttcgatggctttatatgaattagccgtttttgatccctctgaccccgttcttgatccaat gtggagacaaggtatgttcgttatacccttcatgactcgtttaggaataactaattcatg gggtggttggagtatcacagggggaactgtaacgaatccgggtatttggagttacgaagg tgtggccggctcacatattctgttttctggcttgtgcttcttggcagctatctggcattg ggtgtattgggatttagcaatattttctgatgaacgcacaggaaaaccttctttagattt gcccaagatctttggaattcatttatttctttcagggctagcttgctttggttttggcgc atttcatgtaacagggttgtatggtcctggaatctgggtgtccgatccttatggactaac tggagaggtacaacctgtaaatccagcatggggcgtagaaggttttgatccttttgttcc aggaggaatagcctctcatcatattgcagcggggactttaggtatattggcgggtctatt tcatcttagtgtccgtccgccccaacgtctctacaagggattgcgtatgggcaatattga aaccgtcctttccagtagtattgctgctgtcttttttgcagcttttgttgttgctggaac tatgtggtatggttcagcaactacccctattgaattgtttggtcccacccgttatcaatg ggatcagggatacttccagcaagaaatatatcgaagagttggcgcggggctagccaaaaa tcaaagcttatcagaagcgtggtctaaaattcctgaaaaattggctttttatgattacat cgggaataatcctgcaaaagggggattattcagagcgggttcaatggacagcggggatgg aatagccgttgggtggttaggacatcctatctttagagataaagaggggcgtgaactttt tgtacgtcgtatgcctactttttttgaaacatttccggttgttttggtagacggagacgg aattgttagagccgacgttccttttagaagggcagaatcgaagtatagtgtggaacaagt aggtgtaaccatcgagttctatggtggcgaactcaatggagtcagttatagtgaccctgc tactgttaaaaaatatgctagacgcgctcaattaggtgaaatttttgaattagatcgcgc tactttgaaatcggatggtgtttttcgtagcagtccgagaggctggtttacttttgggca tgcttcgtttgctctgctcttcttcttcgggcacatttggcacggtgctagaaccctctt cagagatgtttttgctggtattgacccggatttggatacgcaagtggaatttggagcatt ccaaaaacttggagatccaactacaagaagacaagcagtctgatacaggattgcatttct atgttattttttttttctttattttgttgatttcacataggttaaccgaaaaatcttctt cgccttttctttgaccctttctttttctttatcggagagataatctcaaataaataggta cggaagttataattgtaagtaaagcacgatcgaatttatggaagcattggtttatacatt cctcttagtctccactctagggatcatttttttcgctatcttttttcgagaaccgcctaa aattcaaactaaaagacgaaatgatttttgattatatcaattgaagagcctcccagcatt gggaggctcattacttcaactagtccccgtgttcctcgaacggatctcttaattgttgag agggttgcccaaaagcagtatataaggcataccccgtaaaacttacaagtaaaccagata tagagatggcgactagggttgctgtttccattattagataatttcaagaacaaaaaaatg gatctcggaaaaagcgtttatttacaacggaatggtatacaaagtcaacagatctcaatt aatacaaaataggatgtatggctacacaaactgctgaggagagttctagagctagaccaa aaaaaacaggtttaggggggttattgaaaccattaaattcagaatatggtaaagtagctc ctgggtggggaactacccctttgatgggtcttgcaatggctctatttgcggtattcttat ctattattttggaaatttataattcttccgttttattggacggaatttcaatgaattaga ttcacaataaccgc

GENBANK:CRECPPSBB

LOCUS CRECPPSBB 3266 bp DNA PLN 21-DEC-1995 DEFINITION Chlamydomonas reinhardtii chloroplast Cp47 apoprotein of photosystem II reaction centers (pbsB) gene, complete cds. ACCESSION M84022 NID g336674 KEYWORDS chlorophyll a-binding light harvesting protein; photosystem II. SOURCE Chloroplast Chlamydomonas reinhardtii DNA. ORGANISM Chloroplast Chlamydomonas reinhardtii Eukaryotae; mitochondrial eukaryotes; Viridiplantae; Chlorophyta; Chlorophyceae; Volvocales; Chlamydomonadaceae; Chlamydomonas. REFERENCE 1 (bases 1 to 3266) AUTHORS Berry-Lowe,S.L., Johnson,C.H. and Schmidt,G.W. TITLE Nucleotide sequence of the psbB gene of Chlamydomonas reinhardtii chloroplasts JOURNAL Unpublished (1992) FEATURES Location/Qualifiers source 1..3266 organism="Chlamydomonas reinhardtii" /chloroplast db_xref="taxon:3055" stem_loop 678..751 gene 820..2346 gene="psaB"

CDS 820..2346 gene="psaB" standard_name="CP47" note="putative" codon_start=1 function="Chlorophyll a-Binding Light-Harvesting Protein" product="photosystem II reaction centers CP47 apoprotein" db_xref="PID:g336675" translation="MGLPWYRVHTVVINDPGRLISVHLMHTALVSGWAGSMALFEISV FDPSDPVLNPMWRQGMFVLPFMTRLGITQSWGGWTISGETATNPGIWSYEGVAAAHII LSGALFLASVWHWTYWDLELFRDPRTGKTALDLPKIFGIHLFLSGLLCFGFGAFHVTG VFGPGIWVSDPYGLTGRVQPVAPSWGADGFDPYNPGGIASHHIAAGILGVLAGLFHLC VRPSIRLYFGLSMGSIETVLSSSIAAVFWAAFVVAGTMWYGSAATPIELFGPTRYQWD QGFFQQEIQKRVQASLAEGASLSDAWSRIPEKLAFYDYIGNNPAKGGLFRTGAMNSGD GIAVGWLGHASFKDQEGRELFVRRMPTFFETFPVLLLDKDGIVRADVPFRKAESKYSI EQVGVSVTFYGGELDGLTFTDPATVKKYARKAQLGEIFEFDRSTLQSDGVFRSSPRGW FTFGHVCFALLFFFGHIWHGARTIFRDVFAGIDDDINDQVEFGKYKKLGDTSSLREAF " stem_loop 2432..2465 stem_loop 2892..2982 BASE COUNT 955 a 560 c 595 g 1156 t >CRECPPSBB gccctgtcacggcggaagttgcgggttcgagtcccgtcaatcccgaaattcaaatcatag catatcttattaagatttttaaaacaagtacctctaggtctcattagattattctttagg taaatcaatcgcaaacgtggttcctctgggtaaatgcatttaaactggtattacctaact ggtacatttaagtaggcatttatttaccagaaagagatagttcacaagacaccagtaaca gtagcccgcaactgcccctaaatgtatttgctctaagtttagcttgcctaggcagttgca gcaactgccactggcgtcccgaagagaaaggaggaaactggcagtggcggtaccactgtc actggcgtcccgtaaggggcaaagcataagagtatataaatatgggctaaaatttattct ttctcgggatgtccttcgcataatgtaaacatcctgggataaaaatatgctaaaaaggta attctctagcattcgtttacaggccttaacatatggattacttttaaaataaggtcaaca tctgccatattttatttttcggtatgctctgacaggaatatgagtatcaaaagctgattg caattcctttgtggctaatcaattctttggtgaaaatatataaattaaaatcatgaaaaa aaaactataatataaattaatttaatttaaaatcttaaaaaattttttttaacatagtta attaaattttttaagattttaaattaatgtagaaattaatttctttttatttttataacc ttgtaataattaagtaaaaaaatcagtaaaaaattttttatgggtttaccttggtatcgt gtacatacagtagtaatcaatgaccctgggcgattaatctctgtgcacttaatgcacaca gcgttagtttctggttgggcaggttctatggctttatttgaaatttcagtttttgatcca tctgacccagtattaaacccaatgtggcgtcaaggtatgttcgttctacctttcatgaca cgtttaggtatcacacaatcttggggtggttggactattagcggtgaaacagctacaaac ccaggtatctggagttatgaaggtgttgcagcagctcacattattctttcaggtgcgtta ttcttagcttcagtatggcactggacatactgggatttagaacttttccgtgacccacgt acaggtaaaacagctttagacttaccaaaaatttttggtattcacttattcttatctggt ttactatgttttggtttcggtgcattccacgtaactggtgtttttggtcctggtatttgg gtttcagacccttacggtttaacaggtagggttcaaccagtagctccttcttggggtgct gatggttttgacccatacaacccaggtggtattgcttcacaccacatcgcagctggtatt ttaggtgttttagcaggtttattccacttatgtgtacgtccttctattcgtttatacttc ggtttatcaatgggtagtattgaaactgtattatcaagcagtattgcagcagtattctgg gcagctttcgttgtagcaggtactatgtggtacggttcagcagctactccaattgaatta tttggtccaactcgttaccagtgggaccaaggtttcttccaacaagaaattcaaaaacgt gtacaagctagtttagctgaaggtgcttcattatctgatgcatggtcacgtattccagaa aaattagctttctatgattacattggtaataacccagctaaaggtggtttattccgtact ggtgctatgaacagtggtgatggtatcgctgtaggttggttaggtcacgcatcattcaaa gatcaagaaggtcgcgaattattcgttcgtcgtatgccaacattctttgaaacattccca gttcttttattagataaagatggtattgttcgtgctgacgttcctttccgtaaagctgaa tctaaatatagtattgaacaagtaggtgtatctgttacattctacggtggtgaattagat ggtttaacatttactgatccagctacagttaaaaaatatgctcgtaaagctcaattaggt gaaatttttgaatttgaccgttcaactttacaatctgatggtgttttccgtagtagccca cgtggttggtttacttttggtcacgtatgttttgcattattattcttctttggtcacatt tggcacggtgctcgtacgatcttccgtgacgtatttgctggtattgatgatgatattaat gaccaagttgaattcggtaaatacaaaaaacttggtgatacttcttctctacgtgaagca ttctaagtttttcttttctggcagttggcagagaatgtgtttgtctccttaccgagtata aaaccactctgcaagtacaactgccactgtggtcgccttacgtggtttagttacacgtaa ggcgacgtcctttaggtatttaaaagttttacttacagaacttatttatacatggagggc tccacagcagcaaagttgtataagtttaaaaaagcactctctttttgggactgcttagca aattacctaattttactttttaagcctttaacactttactatgattctttttatagccat acacttgaaattcttcaagtattttaaaacatttttaaaaatgttttagtgcaatgttca tttcaaggtaatttcaatagatacttttgctttgtagctaaagtatgcatttataattaa acttaattcaaaaaaatcaaaatacattttactttttatggaagctttagtatatacttt cttattagttgggactttaggtattattttcttctcaattttcttcagagtcctccacgt atgattaaataatagcatttaattagaatttaaataatatatttgaagttaagcctactg ttgcttaacttcaaatatattatttaaattctattaaatactaccctcttaagagtcatt aaaacactttatggacctacagagttggtggtgcatcatgcgagtaatctatgtagcaag aaatgcataataccgttttaatatttctttaatggtaaagcaagtaaatttcaaataata taaatctatttacagcacatctaacttaccgctaacgattcttaacagccccagatgaga ataactcaatgttgtttagtacaacggcaaaaggtctattaagactcactttctaattat atatattttataaatttgtttatctc

GENBANK:AOPHSYII

LOCUS AOPHSYII 3365 bp DNA PLN 12-SEP-1993 DEFINITION Oenothera argillicola plastid DNA for psbB, psbH and psbN genes for chlorophyll a-binding apoprotein (CP47), 10kDa phosphoprotein, and unknown protein of photosystem II, respectively. ACCESSION X55899 NID g11206 KEYWORDS chlorophyll a-binding protein; phosphoprotein; photosynthesis; photosystem II; psbB gene; psbH gene; psbN gene. SOURCE Appalachian evening primrose. ORGANISM Chloroplast Oenothera argillicola Eukaryotae; mitochondrial eukaryotes; Viridiplantae; Charophyta/Embryophyta group; Embryophyta; Magnoliophyta; Magnoliopsida; Myrtanae; Myrtales; Onagraceae; Oenothera. REFERENCE 1 (bases 1 to 3365) AUTHORS Offermann-Steinhard,K. TITLE Direct Submission JOURNAL Submitted (10-SEP-1990) Offermann-Steinhard K., Heinrich-Heine-Universitaet, Institut fuer Entwicklungs und Molekularbiologie der Pflanzen, Universitaetstr 1, D-4000 Duesseldorf 1 REFERENCE 2 (bases 796 to 3365) AUTHORS Offermann-Steinhard,K. and Herrmann,R.G. TITLE Nucleotide sequences of psbB and psbH, the plastid encoded genes for CP47 and the 10 kDa phosphoprotein of photosystem II in Oenothera hookeri and argillicola JOURNAL Nucleic Acids Res. 18 (21), 6452 (1990) MEDLINE 91057156 COMMENT Data kindly reviewed (03-DEC-1990) by Offermann-Steinhard K. FEATURES Location/Qualifiers source 1..3365 organism="Oenothera argillicola" /chloroplast db_xref="taxon:3940" repeat_region 498..602 note="direct repeat" misc_feature 535..568 note="put. stem loop structure" repeat_unit 535..542 note="inverted repeat A" repeat_unit 561..568 note="inverted repeat A'" repeat_region 603..707 note="direct repeat" repeat_unit 640..647 note="inverted repeat A" misc_feature 640..673 note="put. stem loop structure" repeat_unit 666..673 note="inverted repeat A'" promoter 818..823 note="put. -35 region (psbB)" promoter 842..847 note="put. -10 region (psbB)" precursor_RNA 854..>2556 note="psbB transcript" precursor_RNA 978..>2556 note="psbB transcript" RBS 1019..1022 note="put. rRNA binding site" repeat_unit 1021..1032 note="inverted repeat B" misc_feature 1021..1059 note="put. stem loop structure"

CDS 1030..2556 note="psbB product, chlorophyll a-binding apoprotein (AA 1-508)" codon_start=1 db_xref="PID:g11207" db_xref="SWISS-PROT:P19819" translation="MGLPWYRVHTVVLNDPGRLLAVHIMHTALVAGWAGSMALYELAV FDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTVTNPGIWSYEGVAGSHIL FSGLCFLAAIWHWVYWDLAIFSDERTGKPSLDLPKIFGIHLFLSGLACFGFGAFHVTG LYGPGIWVSDPYGLTGEVQPVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFHLS VRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWD QGYFQQEIYRRVGAGLAKNQSLSEAWSKIPEKLAFYDYIGNNPAKGGLFRAGSMDSGD GIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESKYSV EQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGW FTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDTQVEFGAFQKLGDPTTRRQAV " repeat_unit 1048..1059 note="inverted repeat B'" repeat_unit 1977..1985 note="inverted repeat C" misc_feature 1977..2004 note="put. stem loop structure" repeat_unit 1996..2004 note="inverted repeat C'" repeat_unit 2854..2868 note="inverted repeat D" misc_feature 2854..2882 note="put. stem loop structure" repeat_unit 2873..2882 note="inverted repeat D'"

CDS complement(2893..3024) note="psbN product, unknown protein" codon_start=1 db_xref="PID:g11208" db_xref="SWISS-PROT:P12171" translation="METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHGD"

CDS 3131..3352 note="psbH product, 10 kDa phosphoprotein (AA 1-73)" codon_start=1 db_xref="PID:g11209" db_xref="SWISS-PROT:P19820" translation="MATQTAEESSRARPKKTGLGGLLKPLNSEYGKVAPGWGTTPLMG LAMALFAVFLSIILEIYNSSVLLDGISMN" BASE COUNT 908 a 622 c 785 g 1050 t >AOPHSYII tgtgagtataatcggactcgggctgatgtatcattaccctagcgttagggcccattaggc gtttggacgtttctccgccgaccagtagaaaggatgccattgaggcgagtacccccaggc ctagtgtatacacaggaggtgttacgtattgcatagtatcataaatgagtaatccggcta ctgccagcccgccggagagtttataaagaaataaagattttgagtcgcatcctgtatggt gagaaatatcatcagcccagcaatgtgattcgcgacctcgaagtgaattgcgtcgcctaa aaagatggatctggttcgataaagtacgttatacaggtcaacccaagtcgcgtcgtcttc ctcttcatcttcttcgtcttcgtctccgtcaagcaggaaagggattttaggcataccaat cggcataaaaataaaaaaaaaaaaaaaaaaaaaagcgagcaagaaaaacaaaccgcgacc ctaaaataaaagaagttaaagaagttagagtaaatgttttgttatcggccttaggcgggt cgggctctctcatgtgtaatcgacccgcggccggcttggtgtggaagcgtcagaatgcct tgaaagaagttagagtaaatgttttgttatcggccttaggcgggtcgggctctctcatgt gtaatcgacccgcggccggcttggtgtggaagcgtcagaatgccttgattgtcttaatca tagtgtcttttatttttatggaaaaattattacgataggtcttttgaatgattaacaact atatgtattcgttcatagaaaatgggatccacccccattgcgtattggtacttatcggat atagaatagatctgcttctcattgttcctacgaaccgaattgttacgtttttactaaaaa aacaagaatataacaactattaatcctttctccgagagaatccaccgaaaaggggaggtc cagagcatcgtttttccaatgcaataaagttacatagtgtctatttttcgttgataaagg ggtatttacatgggtttgccttggtatcgtgtgcataccgtcgtattgaatgatcctggc cgtttgctggctgtccatataatgcatacagctttggttgctggttgggccggttcgatg gctttatatgaattagccgtttttgatccctctgaccccgttcttgatccaatgtggaga caaggtatgttcgttatacccttcatgactcgtttaggaataactaattcatggggtggt tggagtatcacagggggaactgtaacgaatccgggtatttggagttacgaaggtgtggcc ggctcacatattctgttttctggcttgtgcttcttggcagctatctggcattgggtgtat tgggatttagcaatattttctgatgaacgcacaggaaaaccttctttagatttgcccaag atctttggaattcatttatttctttcagggctagcttgctttggttttggcgcatttcat gtaacagggttgtatggtcctggaatctgggtgtccgatccttatggactaactggagag gtacaacctgtaaatccagcatggggcgtagaaggttttgatccttttgttccaggagga atagcctctcatcatattgcagcggggactttaggtatattggcgggtctatttcatctt agtgtccgtccgccccaacgtctctacaagggattgcgtatgggcaatattgaaaccgtc ctttccagtagtattgctgctgtcttttttgcagcttttgttgttgctggaactatgtgg tatggttcagcaactacccctattgaattgtttggtcccacccgttatcaatgggatcag ggatacttccagcaagaaatatatcgaagagttggcgcggggctagccaaaaatcaaagc ttatcagaagcgtggtctaaaattcctgaaaaattggctttttatgattacatcgggaat aatcctgcaaaagggggattattcagagcgggttcaatggacagcggggatggaatagcc gttgggtggttaggacatcctatctttagagataaagaggggcgtgaactttttgtacgt cgtatgcctactttttttgaaacatttccggttgttttggtagacggagacggaattgtt agagccgacgttccttttagaagggcagaatcgaagtatagtgtggaacaagtaggtgta accgtcgagttctatggtggcgaactcaatggagtcagttatagtgaccctgctactgtt aaaaaatatgctagacgcgctcaattaggtgaaatttttgaattagatcgcgctactttg aaatcggatggtgtttttcgtagcagtccgagaggctggtttacttttgggcatgcttcg tttgctctgctcttcttcttcgggcacatttggcacggtgctagaaccctcttcagagat gtttttgctggtattgacccggatttggatacgcaagtggaatttggagcattccaaaaa cttggagatccaactacaagaagacaagcagtctgatacaggattgcatttctatgttat tttttttttctttattttgttgatttcacataggttaaccgaaaaatcttcttcgccttt tctttgaccctttctttttctttatcggagagataatctcaaataaataggtacggaagt tataattgtaagtaaagcacgatcgaatttatggaagcattggtttatacattcctctta gtctccactctagggatcatttttttcgctatcttttttcgagaaccgcctaaaattcaa actaaaagacgaaatgatttttgattatatcaattgaagagcctcccagcattgggaggc tcattacttcaactagtccccgtgttcctcgaacggatctcttaattgttgagagggttg cccaaaagcagtatataaggcataccccgtaaaacttacaagtaaaccagatatagagat ggcgactagggttgctgtttccattattagataatttcaagaacaaaaaaatggatctcg gaaaaagcgtttatttacaacggaatggtatacaaagtcaacagatctcaattaatacaa aataggatgtatggctacacaaactgctgaggagagttctagagctagaccaaaaaaaac aggtttaggggggttattgaaaccattaaattcagaatatggtaaagtagctcctgggtg gggaactacccctttgatgggtcttgcaatggctctatttgcggtattcttatctattat tttggaaatttataattcttccgttttattggacggaatttcaatgaattagattcacaa taacc

PIR:S12130

>P1;S12130 photosystem II protein psbN - Appalachian evening primrose chloroplast C;Species: chloroplast Oenothera argillicola (Appalachian evening primrose) C;Date: 31-Dec-1993 #sequence_revision 31-Dec-1993 #text_change 19-Jan-1996 C;Accession: S12130 R;Offermann-Steinhard, K.; Herrmann, R.G. Nucleic Acids Res. 18, 6452, 1990 A;Title: Nucleotide sequences of psbB and psbH, the plastid encoded genes for CP47 and the 10 kDa phosphoprotein of photosystem II in Oenothera hookeri and argillicola. A;Reference number: S12129; MUID:91057156 A;Accession: S12130 A;Status: translation not shown A;Molecule type: DNA A;Residues: 1-43 A;Cross-references: EMBL:X55899 C;Genetics: A;Gene: psbN A;Genome: chloroplast C;Superfamily: photosystem II protein psbN C;Keywords: chloroplast; membrane-associated complex; photosynthesis; photosystem II; thylakoid >S12130 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHGD

PIR:S12133

>P1;S12133 photosystem II protein psbN - Hooker's evening primrose chloroplast C;Species: chloroplast Oenothera hookeri subsp. hookeri (Hooker's evening primrose) C;Date: 31-Dec-1993 #sequence_revision 31-Dec-1993 #text_change 18-Nov-1994 C;Accession: S12133 R;Offermann-Steinhard, K.; Herrmann, R.G. Nucleic Acids Res. 18, 6452, 1990 A;Title: Nucleotide sequences of psbB and psbH, the plastid encoded genes for CP47 and the 10 kDa phosphoprotein of photosystem II in Oenothera hookeri and argillicola. A;Reference number: S12129; MUID:91057156 A;Accession: S12133 A;Status: translation not shown A;Molecule type: DNA A;Residues: 1-43 A;Cross-references: EMBL:X55900 C;Genetics: A;Gene: psbN A;Genome: chloroplast C;Superfamily: photosystem II protein psbN C;Keywords: chloroplast; photosynthesis; photosystem II; thylakoid >S12133 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHGD

PIR:S12134

>P1;S12134 photosystem II phosphoprotein psbH - Hooker's evening primrose chloroplast N;Alternate names: photosystem II 10K phosphoprotein C;Species: chloroplast Oenothera hookeri subsp. hookeri (Hooker's evening primrose) C;Date: 31-Dec-1993 #sequence_revision 31-Dec-1993 #text_change 19-Jan-1996 C;Accession: S12134 R;Offermann-Steinhard, K.; Herrmann, R.G. Nucleic Acids Res. 18, 6452, 1990 A;Title: Nucleotide sequences of psbB and psbH, the plastid encoded genes for CP47 and the 10 kDa phosphoprotein of photosystem II in Oenothera hookeri and argillicola. A;Reference number: S12129; MUID:91057156 A;Accession: S12134 A;Molecule type: DNA A;Residues: 1-73 A;Cross-references: EMBL:X55900 C;Genetics: A;Gene: psbH A;Genome: chloroplast C;Superfamily: photosystem II phosphoprotein psbH C;Keywords: chloroplast; membrane-associated complex; phosphoprotein; photosynthesis; photosystem II; thylakoid >S12134 MATQTAEESSRARPKKTGLGGLLKPLNSEYGKVAPGWGTTPLMGLAMALFAVFLSIILEI YNSSVLLDGISMN

PIR:S12131

>P1;S12131 photosystem II phosphoprotein psbH - Appalachian evening primrose chloroplast N;Alternate names: photosystem II 10K phosphoprotein C;Species: chloroplast Oenothera argillicola (Appalachian evening primrose) C;Date: 31-Dec-1993 #sequence_revision 31-Dec-1993 #text_change 19-Jan-1996 C;Accession: S12131 R;Offermann-Steinhard, K.; Herrmann, R.G. Nucleic Acids Res. 18, 6452, 1990 A;Title: Nucleotide sequences of psbB and psbH, the plastid encoded genes for CP47 and the 10 kDa phosphoprotein of photosystem II in Oenothera hookeri and argillicola. A;Reference number: S12129; MUID:91057156 A;Accession: S12131 A;Molecule type: DNA A;Residues: 1-73 A;Cross-references: EMBL:X55899 C;Genetics: A;Gene: psbH A;Genome: chloroplast C;Superfamily: photosystem II phosphoprotein psbH C;Keywords: chloroplast; membrane-associated complex; phosphoprotein; photosynthesis; photosystem II; thylakoid >S12131 MATQTAEESSRARPKKTGLGGLLKPLNSEYGKVAPGWGTTPLMGLAMALFAVFLSIILEI YNSSVLLDGISMN

PIR:S12129

>P1;S12129 photosystem II chlorophyll a-binding protein psbB - Appalachian evening primrose chloroplast C;Species: chloroplast Oenothera argillicola (Appalachian evening primrose) C;Date: 31-Dec-1993 #sequence_revision 31-Dec-1993 #text_change 03-May-1994 C;Accession: S12129 R;Offermann-Steinhard, K.; Herrmann, R.G. Nucleic Acids Res. 18, 6452, 1990 A;Title: Nucleotide sequences of psbB and psbH, the plastid encoded genes for CP47 and the 10 kDa phosphoprotein of photosystem II in Oenothera hookeri and argillicola. A;Reference number: S12129; MUID:91057156 A;Accession: S12129 A;Molecule type: DNA A;Residues: 1-508 A;Cross-references: EMBL:X55899 C;Genetics: A;Gene: psbB A;Genome: chloroplast C;Superfamily: photosystem II chlorophyll a-binding protein psbB C;Keywords: chlorophyll; chloroplast; photosynthesis; photosystem II; thylakoid >S12129 MGLPWYRVHTVVLNDPGRLLAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM FVIPFMTRLGITNSWGGWSITGGTVTNPGIWSYEGVAGSHILFSGLCFLAAIWHWVYWDL AIFSDERTGKPSLDLPKIFGIHLFLSGLACFGFGAFHVTGLYGPGIWVSDPYGLTGEVQP VNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSS SIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVGAGLAKNQSLSE AWSKIPEKLAFYDYIGNNPAKGGLFRAGSMDSGDGIAVGWLGHPIFRDKEGRELFVRRMP TFFETFPVVLVDGDGIVRADVPFRRAESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKY ARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFA GIDPDLDTQVEFGAFQKLGDPTTRRQAV

PIR:S12132

>P1;S12132 photosystem II chlorophyll a-binding protein psbB - Hooker's evening primrose chloroplast C;Species: chloroplast Oenothera hookeri subsp. hookeri (Hooker's evening primrose) C;Date: 31-Dec-1993 #sequence_revision 31-Dec-1993 #text_change 31-Dec-1993 C;Accession: S12132; S12768 R;Offermann-Steinhard, K.; Herrmann, R.G. Nucleic Acids Res. 18, 6452, 1990 A;Title: Nucleotide sequences of psbB and psbH, the plastid encoded genes for CP47 and the 10 kDa phosphoprotein of photosystem II in Oenothera hookeri and argillicola. A;Reference number: S12129; MUID:91057156 A;Accession: S12132 A;Molecule type: DNA A;Residues: 1-508 A;Cross-references: EMBL:X55900 R;Offermann-Steinhard, K. submitted to the EMBL Data Library, September 1990 A;Reference number: S12768 A;Accession: S12768 A;Molecule type: DNA A;Residues: 1-398,'I',400-508 A;Cross-references: EMBL:X55900 C;Genetics: A;Gene: psbB A;Genome: chloroplast C;Superfamily: photosystem II chlorophyll a-binding protein psbB C;Keywords: chlorophyll; chloroplast; membrane protein; photosynthesis; photosystem II; thylakoid >S12132 MGLPWYRVHTVVLNDPGRLLAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM FVIPFMTRLGITNSWGGWSITGGTVTNPGIWSYEGVAGSHILFSGLCFLAAIWHWVYWDL AIFSDERTGKPSLDLPKIFGIHLFLSGLACFGFGAFHVTGLYGPGIWVSDPYGLTGEVQP VNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSS SIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVGAGLAKNQSLSE AWSKIPEKLAFYDYIGNNPAKGGLFRAGSMDSGDGIAVGWLGHPIFRDKEGRELFVRRMP TFFETFPVVLVDGDGIVRADVPFRRAESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKY ARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFA GIDPDLDTQVEFGAFQKLGDPTTRRQAV

TREMBL:Q36791

ID Q36791 PRELIMINARY; PRT; 511 AA. AC Q36791; DT 01-NOV-1996 (TREMBLREL. 01, CREATED) DT 01-NOV-1996 (TREMBLREL. 01, LAST SEQUENCE UPDATE) DT 01-NOV-1996 (TREMBLREL. 01, LAST ANNOTATION UPDATE) DE CHLOROPLAST DNA FOR CP47 GENE. GN CP47. OS SPINACIA OLERACEA (SPINACH). OG CHLOROPLAST. OC EUKARYOTA; PLANTA; EMBRYOPHYTA; ANGIOSPERMAE; DICOTYLEDONEAE; OC CARYOPHYLLALES; CHENOPODIACEAE. RN [1] RP SEQUENCE FROM N.A. RC TISSUE=LEAF; RA WITTY M., BARBER J., HILLER R.G.; RL SUBMITTED (JUL-1996) TO EMBL/GENBANK/DDBJ DATA BANKS. DR EMBL; X98877; E251802; -. KW CHLOROPLAST. SQ SEQUENCE 511 AA; 56481 MW; 181C15F6 CRC32; >Q36791 MKISGLPWYRVHTVVLNDPGRLISVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWR QGMFVIPFMTRLGITNSWGGWSITGGTITDPGIWSYEGVAGAHIMFSGLCFLAAIWHWVY WDLEIFSDERTGKPSLDLPKIFGIHLFLSGVACFGFGAFHVTGLYGPGIWVSDPYGLTGK VQPVSPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETV LSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSAGLAENQS FSEAWSKIPEKLAFYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPIFRDKEGRELFVR RMPTFFETFPVVLIDGDGIVRADVPFRRAESKYSVEQVGVTVEFYGGELNGVSYSDPATV KKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGSRTLFRD VFAGIDPDLDVQVEFGAFQKIGDPTTRRQGV

TREMBL:Q33314

TREMBLNEW:OSCHLPLXX_85

ID OSCHLPLXX_85 standard; PRT; 509 AA. AC Z67753; DR EMBL; Z67753; OSCHLPLXX. DE gene: "psbB"; product: "PSII, CP47 chlorophyll apoprotein"; DE O.sinensis chloroplast DNA, complete genome OS Odontella sinensis OC Eukaryotae; mitochondrial eukaryotes; stramenopiles; OC Bacillariophyta; Coscinodiscophyceae; Biddulphiophycidae; OC Eupodiscales; Eupodiscaceae; Odontella. OG Chloroplast FT CDS 76048..77577 FT /gene="psbB" FT /product="PSII, CP47 chlorophyll apoprotein" FT /db_xref="PID:e212163" FT /db_xref="SWISS-PROT:P49471" FT /translation="MALPWYRVHTVVLNDPGRLIAVHLMHTALVAGWAGSMALYELAVF FT DPSDPVLNPMWRQGMFVMPFMTRLGITDSWGGWSITGESVSNPGIWSFEGVALSHIILS FT GMCFLAAIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLFLSGLLCFGFGAFHVTGLFG FT PGIWVSDAYGVTGKVQPVAPAWGADGFNPFNPGGIAAHHIAAGIFGIFAGIFHLTVRPP FT QRLYRALRMGNIETVLSSSIAAVFFAAFVTSGTMWYGAAATPIELFGPTRYQWDSGYFQ FT QEIERQVETSVSEGLSESQAWSRIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAW FT LGHPIFRDKDGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTV FT DFYGGKLNGQTFKDAPTVKKFARKAQLGEVFEFDRTSLESDGVFRSSPRGWYTFGHANF FT ALLFFFGHLWHGGRTIFRDVFTGIGAEVTEQVEFGAFQKLGDKSTKKQGAV" SQ Sequence 509 BP; >OSCHLPLXX_85 MALPWYRVHTVVLNDPGRLIAVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGM FVMPFMTRLGITDSWGGWSITGESVSNPGIWSFEGVALSHIILSGMCFLAAIWHWVYWDL ELFRDPRTGEPALDLPKIFGIHLFLSGLLCFGFGAFHVTGLFGPGIWVSDAYGVTGKVQP VAPAWGADGFNPFNPGGIAAHHIAAGIFGIFAGIFHLTVRPPQRLYRALRMGNIETVLSS SIAAVFFAAFVTSGTMWYGAAATPIELFGPTRYQWDSGYFQQEIERQVETSVSEGLSESQ AWSRIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPIFRDKDGRELTVRRMP AFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVDFYGGKLNGQTFKDAPTVKKF ARKAQLGEVFEFDRTSLESDGVFRSSPRGWYTFGHANFALLFFFGHLWHGGRTIFRDVFT GIGAEVTEQVEFGAFQKLGDKSTKKQGAV